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Temporal - #160

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smasongarrison wants to merge 128 commits into

mainfrom

temporal

Open

Temporal#160
smasongarrison wants to merge 128 commits into
mainfrom
temporal

Commits on Jul 6, 2026
- Add temporal pedigree model builder functions
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  7ab45cf
- Adjust AE smoke test beta and eta comment
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Commits on Jul 7, 2026
- Generalize temporal model time basis
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- Create datanotes.txt
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- Update buildmxPedigrees.R
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Commits on Jul 8, 2026
- Update helpGeneric.R
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- chec
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- Create famofengland.R
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- draft
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- fix docs
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- add unit tests
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Commits on Jul 9, 2026
- fix check id error
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  f62ffc6
- Refactor temporal smoke tests and defaults
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- add clean ID option
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- clean names
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- Update buildmxPedigrees.R
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Commits on Jul 10, 2026
- notes
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- basic mc
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- results
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- Fix temporal MC convergence and add Panel A
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Commits on Jul 11, 2026
- styling
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- smaerter matrixes
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- provide staticgrouping option
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- add tests
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- add tests
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- Merge branch 'temporal' of https://github.com/R-Computing-Lab/BGmisc into temporal
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- Update helpGeneric.R
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- make difference components optional
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Commits on Jul 12, 2026
- Update temporal_BGmisc_smoke_test_AE_full.R
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- Update temporal_BGmisc_smoke_test_AE_full.R
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  31bb154
- Update temporal_BGmisc_smoke_test_AE_full.R
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  10399f4
- Merge branch 'temporal' of https://github.com/R-Computing-Lab/BGmisc into temporal
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  52a8dae
- Update temporal_BGmisc_smoke_test_AE_full.R
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- fix
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- Update smoketest_helpers.R
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Commits on Jul 14, 2026
- Update DESCRIPTION
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- more flexibility in generation
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- ready to run?
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- update
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- add helpers
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  59b0278
- fix time span
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  9dba6a1
- Update temporal_basic_mc.R
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- Update temporal_basic_mc.R
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Commits on Jul 15, 2026
- prelim sim
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- Create replication_results.csv
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- adding proportion
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- figure and notes
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Commits on Jul 16, 2026
- split the sim and plot of sim
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- sim results
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- panels
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- Scale up MC simulation to 500 reps/families
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Commits on Jul 18, 2026
- add fast version
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- Update temporal_basic_mc.R
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- Update temporal_basic_mc_plots.R
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- results
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- Refine temporal panels and simulation settings
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- simresults
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- push
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- figures
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- merge
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Commits on Jul 19, 2026
- Update replication_results.csv
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- Update replication_results.csv
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- more comments
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- more reps
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- results
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- Merge branch 'temporal' of https://github.com/R-Computing-Lab/BGmisc into temporal
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Commits on Jul 20, 2026
- sim done
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- temporal
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- update panel
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- Update replication_results.csv
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- Update replication_results.csv
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Commits on Jul 22, 2026
- smarter variable name
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- results
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- Merge branch 'temporal' of https://github.com/R-Computing-Lab/BGmisc into temporal
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Commits on Jul 23, 2026
- change param
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- revised panel
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- Update replication_results.csv
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- flip color
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Commits on Jul 24, 2026
- Update replication_results.csv
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- plots
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Commits on Jul 25, 2026
- more reps
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- panel figures
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- Update panels.R
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- Show two pedigrees in relatedness matrix figure
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  4102adf
- Refine temporal panel simulation and styling
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  5b64feb
- Update replication_results.csv
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Commits on Jul 26, 2026
- cleanup
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- push
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Commits on Jul 27, 2026
- ci names
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- cis
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- Update replication_results.csv
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Commits on Jul 28, 2026
- Update replication_results.csv
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Commits on Jul 29, 2026
- Refine panel titles and refresh simulation outputs
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- Update replication_results.csv
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Commits on Jul 30, 2026
- results
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Commits on Aug 1, 2026
- push
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Commits on Aug 2, 2026
- addped prep for moving
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- Merge branch 'main' into temporal
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  0b4e9e1
- Update test-tweakPedigree.R
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- Update test-buildComponent.R
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Commits on Aug 4, 2026
- finished simulation run
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- helpers
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  fd696cb
- partial fix for adding means
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  570a9e9
- Update test-buildComponent.R
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  057c2f3
- add means....
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- smarter poly
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Commits on Aug 5, 2026
- Create replication_results.csv
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- sims
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- end sim
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  e01abcd
- have fixed frozen g_mean bug
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  10c7ad2
- Update addParentalChain.R
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  16bb21b
- Create replication_results.csv
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- Merge branch 'main' into temporal
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  350f48e
Commits on Aug 6, 2026
- Update replication_results.csv
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  1cc5bfd
- open variables to pass through
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- sims
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Commits on Aug 8, 2026
- moving to helper file
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Commits on Aug 9, 2026
- sims
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  450dfc0
- Update replication_results.csv
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Commits on Aug 10, 2026
- results
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Commits on Sep 12, 2026
- read.csv(parameter_targets_file)
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Commits on Oct 7, 2026
- Create ped2gendistancetesting.R
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- Update ped2gendistancetesting.R
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- clean up
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Commits on Oct 8, 2026
- Document temporal mean parameters
  
  Copilot
  and
  smasongarrison
  authored
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- Update ped2gendistancetesting.R
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Commits on Oct 14, 2026
- clean up
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  6a472cf
- Delete data-raw/4b863bee-d922-4d85-b51d-760bc1521409.png
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  0bd337b

Commits

Commits on Jul 6, 2026

Commits on Jul 7, 2026

Commits on Jul 8, 2026

Commits on Jul 9, 2026

Commits on Jul 10, 2026

Commits on Jul 11, 2026

Commits on Jul 12, 2026

Commits on Jul 14, 2026

Commits on Jul 15, 2026

Commits on Jul 16, 2026

Commits on Jul 18, 2026

Commits on Jul 19, 2026

Commits on Jul 20, 2026

Commits on Jul 22, 2026

Commits on Jul 23, 2026

Commits on Jul 24, 2026

Commits on Jul 25, 2026

Commits on Jul 26, 2026

Commits on Jul 27, 2026

Commits on Jul 28, 2026

Commits on Jul 29, 2026

Commits on Jul 30, 2026

Commits on Aug 1, 2026

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Commits on Aug 5, 2026

Commits on Aug 6, 2026

Commits on Aug 8, 2026