Search results

Summarize FCC scores across CRE clusters and visualize

Status: Open.

#44 In ReddyLab/Proj_ENCODE_FCC;

· clintko opened on Jun 13, 2025

Summarize the enriched TFs for each cluster into a table

Status: Open.

#43 In ReddyLab/Proj_ENCODE_FCC;

· clintko opened on Jun 13, 2025

Apply the updated enrichment test for each CRE cluster across all ChIP-seq factors

Status: Open.

#42 In ReddyLab/Proj_ENCODE_FCC;

· clintko opened on Jun 13, 2025

Performed Phenograph clustering on CRE regions by their ChIP-seq log2 fold changes to identify CRE clusters

Status: Open.

#41 In ReddyLab/Proj_ENCODE_FCC;

· clintko opened on Jun 13, 2025

Visualize ChIP-seq scores on the UMAP for some histone marks and TFs

Status: Open.

#40 In ReddyLab/Proj_ENCODE_FCC;

· clintko opened on Jun 13, 2025

Label cCREs annotation on the UMAP

Status: Open.

#39 In ReddyLab/Proj_ENCODE_FCC;

· clintko opened on Jun 13, 2025

Label proximal/distal CREs on the UMAP

Status: Open.

#38 In ReddyLab/Proj_ENCODE_FCC;

· clintko opened on Jun 13, 2025

Performed UMAP on finalized CREs and visualize the two-dimentional embedded of the regions

Status: Open.

#37 In ReddyLab/Proj_ENCODE_FCC;

· clintko opened on Jun 13, 2025

Annotate ATAC with FCC peaks: summarize and visualize summary of the union table

Status: Open.

#36 In ReddyLab/Proj_ENCODE_FCC;

· clintko opened on Jun 11, 2025

Annotate ATAC with FCC peaks: summarize and visualize the STARR/MPRA/CRISPR CRE table

Status: Open.

#35 In ReddyLab/Proj_ENCODE_FCC;

· clintko opened on Jun 11, 2025

Annotate ATAC with FCC peaks: finalize CRE table for UMAP/cluster analysis

Status: Open.

#34 In ReddyLab/Proj_ENCODE_FCC;

· clintko opened on Jun 11, 2025

Annotate ATAC with FCC peaks: generate union peak table as resource

Status: Open.

#32 In ReddyLab/Proj_ENCODE_FCC;

· clintko opened on Jun 11, 2025