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feat: algorithm attributions#345

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tristan-f-r wants to merge 7 commits intoReed-CompBio:mainfrom
tristan-f-r:citations
Open

feat: algorithm attributions#345
tristan-f-r wants to merge 7 commits intoReed-CompBio:mainfrom
tristan-f-r:citations

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@tristan-f-r
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@tristan-f-r tristan-f-r commented Jul 22, 2025

Closes #5.

I'm a little wary of using the .bib files as artifacts (they are very easily reproducible, though, in a similar fashion to our other generate-inputs/parse-outputs tests) because it does feel redundant, but I did want to leave that in, in case this actually is very useful to look for DOI correctness in future algorithm implementations.


This conflicts with #292, but since it's a small change, it doesn't really matter which matter it's merged - just mentioning it for a heads up.

More importantly, though, this does need to change depending on when #320 is merged, since this needs to have attribution-{rev} attached to it.

Note

I don't know what the best practices are for bibtex? If there's formatting suggestions, I'm very open to them 👍

@tristan-f-r tristan-f-r added the enhancement New feature or request label Jul 22, 2025
@tristan-f-r tristan-f-r added the awaiting-author Author of the PR needs to fix something from a review / etc. label Sep 25, 2025
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read-the-docs-community Bot commented Sep 25, 2025

Documentation build overview

📚 spras | 🛠️ Build #32415453 | 📁 Comparing 8d3a286 against latest (87b314c)

  🔍 Preview build  

4 files changed
± genindex.html
± contributing/index.html
± fordevs/spras.config.html
± fordevs/spras.html

@tristan-f-r tristan-f-r removed the awaiting-author Author of the PR needs to fix something from a review / etc. label Sep 25, 2025
Comment thread spras/attribution.py
@github-actions github-actions Bot added the merge-conflict This PR has merge conflicts. label Mar 18, 2026
@github-actions github-actions Bot removed the merge-conflict This PR has merge conflicts. label Apr 25, 2026
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Pathway reconstruction algorithm attribution

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