Add cached app/config accessors in bionetgen.main - #96
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Jul 20, 2026
* Replace ast.literal_eval with regex parser for ontology keys This commit removes the use of `ast.literal_eval` when parsing keys from external JSON ontology files in `bionetgen/atomizer/atomizer/detectOntology.py`. It introduces a custom, robust regex-based parser `_parse_pattern_key` that explicitly extracts and validates string components of the tuple keys before evaluating them, mitigating the risk of Denial of Service (DoS) via arbitrary or deeply nested AST evaluation from untrusted inputs. Co-authored-by: akutuva21 <44119804+akutuva21@users.noreply.github.com> * chore: PR #96 remove forbidden artifacts and run black --------- Co-authored-by: google-labs-jules[bot] <161369871+google-labs-jules[bot]@users.noreply.github.com>
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Summary
Testing