All pull requests

Pull requests

• VC3D Lasagna: hash segment uploads in the order the service checks

  #2086·protonjls opened Oct 13, 2026·1 task done·

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• VC3D: reloading the segment list keeps the active segment instead of switching to an unfetched Open Data segment (abort)

  #2085·protonjls opened Oct 13, 2026·1 task done·

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• VC3D AppImage: open remote data on Fedora / RHEL / Rocky / AlmaLinux (use the host's CA bundle)

  #2084·protonjls opened Oct 13, 2026·1 task done·

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• community projects: add spiral-winding-audit

  #2083·TAUIL-Abd-Elilah opened Oct 13, 2026Contributor·

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• finalize_outputs: voxels no patch reached are background, not p = 0.5 (addresses #1114, #1875)

  #2082·mg255 opened Oct 13, 2026·1 task·

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• vc_grow_seg_from_seed: warn when no loss reads the volume (no normal_grid_path)

  #2081·ChaseHendrick opened Oct 13, 2026·1 task done·

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• Volume: open a local metadata.json that has no scan record (published surface predictions)

  #2079·ChaseHendrick opened Oct 13, 2026·1 task done·

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• scrollprize.org: "PHerc. Paris. N" with the dot (fixes #2068) and twelve dead doc links (fixes #2076)

  #2074·stantheman0128 opened Oct 13, 2026Contributor·1 task done·

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• sheet tracer: write area_cm2 at the traced volume's voxel size

  #2073·evilaliv3 opened Oct 13, 2026Contributor·1 task done·

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• zarr_tasks: create in-place recompress output as zarr v2

  #2069·stantheman0128 opened Oct 13, 2026Contributor·1 task·

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• Resampled tifxyz grids: don't keep vertices interpolated from a missing vertex (merge_concat_runs, repair_tifxyz_spacing)

  #2067·CVasilopoulos opened Oct 13, 2026Contributor·1 task done·

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• spiral-fitting: keep CPU preview sampling on the radius tensor device

  #2065·oleg494 opened Oct 13, 2026·1 task·

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• ink_detection: retry transient Windows shared-cache read races

  #2066·oleg494 opened Oct 13, 2026·1 task·

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• ink_detection: discover patches synchronously with zero workers

  #2064·oleg494 opened Oct 13, 2026·1 task·

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• vc_grow_seg_from_seed: opt-in seed_anchor_xyz keeps a vertex fixed at the seed

  #2063·ChaseHendrick opened Oct 12, 2026·1 task done·

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• losses: apply sigmoid by default in standalone MemoryEfficientSoftDiceLoss (fixes #1488)

  #2062·mg255 opened Oct 12, 2026·1 task·

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• compute_st: --delete-intermediate deletes only the structure tensor, not the whole output store

  #2061·CVasilopoulos opened Oct 12, 2026Contributor·1 task done·

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• VC3D: count an S3 404 as a missing chunk only when S3 says NoSuchKey

  #2060·ChaseHendrick opened Oct 12, 2026·1 task done·

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• ink_detection flat inference: --cache-dir / --cache-max-gb for remote volumes

  #2057·nbidunwad opened Oct 12, 2026·1 task done·

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• spiral-fitting: write the measured vertex spacing as the tifxyz scale, and the 3D area

  #2056·skuzbucket1 opened Oct 12, 2026Contributor·

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• spiral-fitting: read SQLite-backed track DBMs on Python < 3.13 (enables Windows + AMD ROCm runs)

  #2055·vincentl065 opened Oct 12, 2026·1 task done·

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• copy: speed up bbox preparation without changing box output

  #2054·ChristianPiccirillo opened Oct 12, 2026·1 task done·

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• Fix README filename typoTraining and inference tools for Vesuvius Cha…

  #2053·axmadhwj opened Oct 12, 2026·1 task done·

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• ink_detection inference: blocking host-to-MPS copies of freed batches (torch 2.11/2.12)

  #2051·AndreasHad04 opened Oct 12, 2026Contributor·

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• optimized_inference: fix the indentation of the device_utils import (entrypoint.py does not parse)

  #2050·AndreasHad04 opened Oct 12, 2026Contributor·

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