finalized dist archived dw - #16
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* set up exponential kernel * adjust kernel parameters * convert test code to functions in HabitatConditionAnalyzer class * adjust parameters to prevent computation timeouts
* added dir and code for creating test/control grids as an input for future propensity score steps * added geopandas to toml * set up psm testing notebook * added archive directory locally, including it in the gitignore * added geopandas * added numpy * updated to output parquet, gave option to save intermediate files * added data dir for repo-based files * added variables related to PSM grid creation * add pyarrow to toml --------- Co-authored-by: alanalutz <81712531+alanalutz@users.noreply.github.com>
* initialize PSM testing * match treatment and control cells * test global grid creation idea * match cells using global propensity model * Update src/psm/ps_grid_creation.py Co-authored-by: Christian Thomas <christian@skytruth.org> --------- Co-authored-by: Christian Thomas <christian@skytruth.org>
* sampling strategy for interior cells * code to sample exterior cells * convert exterior cell sampling to iterative .py file * convert exterior cell sampling to iterative .py file * run ps model using new control cells
* initialize relative effectiveness code * standardize CRS to 6933 for absolute effectiveness * standardize CRS and variables for psm scripts * fix reprojection error in control cell sampling * rename and organize files * fix relative effectiveness code * combine 2 relative effectiveness scripts into 1 * fix CRS in ps_model.ipynb * calculate relative effectiveness
* add covariates * rename file * enforce min distance between sample points * apply land mask * stratify samples by biome * export sample points to asset * add comment for biome labels --------- Co-authored-by: Alana Lutz <alana@skytruth.org>
* scale PSM globally * save model * update gitignore * stop tracking psm_tile_state * Update src/utils/variables.py Co-authored-by: Will Lytle <wlytle89@gmail.com> --------- Co-authored-by: Alana Lutz <alana@skytruth.org> Co-authored-by: Will Lytle <wlytle89@gmail.com>
* archive notebooks * match cells * add newline to end of script --------- Co-authored-by: Alana Lutz <alana@skytruth.org>
… a preference for changes incoming from main.
…rld which now includes a documentation notebook and all related modules and .py files.
…le dw_variables.py
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Description
Archived all work relating to Dynamic World in the
notebooks/archive/dynamic_worldfolder and updated the branch to reflect the status ofmain.All analysis and code written for Dynamic World (prefix dw_) was moved into the archive under
notebooks/archive/dynamic_world. This code is flawed and the notebook contains errors, like broken data pipelines and unfinished analysis, that were not resolved at this point but are explicitly mentioned in the dist_dw_psm.ipynb. Leaving them in the archive means they will not be lost and can be returned to if Dynamic World or a similar data source is used in the future.Created, updated, or replaced Files and/or tables
DIST_ALERT.ipynb: removed all dynamic world and propensity score matching - now only includes dist related worknotebooks/archive/dynamic_world: an archive folder containing all Dynamic World related work and the PSM attemptsdist_dw_psm.ipynb: a notebook that walks the user through the Dynamic World functions and attempts at integration into PSMdw_analysis: moved to archivedw_builders: moved to archivedw_results: moved to archivedw_variables: created to move variables to the archivedw_visualization: moved to archiveNotes for reviewers
The main notebook
DIST_ALERT.ipynbas it is in this PR should be production ready, so any feedback is most important and crucial at this point.Stack created with GitHub Stacks CLI • Give Feedback 💬