Implementation Plan: Generalize generate-report Template for Non-Software Research by Trecek · Pull Request #796 · TalonT-Org/AutoSkillit

Trecek · 2026-04-13T05:58:39Z

Summary

The generate-report skill's SKILL.md contained software-engineering defaults that reduce
credibility and usefulness for non-software research (biology, economics, social science).
Four targeted changes make the template domain-adaptive without breaking existing software
research reports:

Remove the Rust-specific cargo tree example from the Environment section.
Add domain-adaptive section ordering guidance (biology: Results before Methods; keep
software order as default).
Add an optional "Data Availability" section to the report template (required by biology
journals).
Allow "Discussion and Future Directions" as an alternative title for the
"Recommendations" section in non-engineering domains.

All changes are strictly additive loosening of the template. The existing default ordering
and section names remain valid; agents gain permission to adapt them.

Architecture Impact

Scenarios (Validation) Diagram

%%{init: {'flowchart': {'nodeSpacing': 40, 'rankSpacing': 55, 'curve': 'basis'}}}%%
flowchart TB
    %% CLASS DEFINITIONS %%
    classDef cli fill:#1a237e,stroke:#7986cb,stroke-width:2px,color:#fff;
    classDef stateNode fill:#004d40,stroke:#4db6ac,stroke-width:2px,color:#fff;
    classDef handler fill:#e65100,stroke:#ffb74d,stroke-width:2px,color:#fff;
    classDef phase fill:#6a1b9a,stroke:#ba68c8,stroke-width:2px,color:#fff;
    classDef output fill:#00695c,stroke:#4db6ac,stroke-width:2px,color:#fff;
    classDef detector fill:#b71c1c,stroke:#ef5350,stroke-width:2px,color:#fff;
    classDef integration fill:#c62828,stroke:#ef9a9a,stroke-width:2px,color:#fff;

    subgraph S1 ["SCENARIO 1: Conclusive Research Report (Primary Happy Path)"]
        direction LR
        S1_RECIPE["Recipe Orchestrator<br/>━━━━━━━━━━<br/>research.yaml<br/>generate_report step"]
        S1_RUNSKILL["run_skill MCP Tool<br/>━━━━━━━━━━<br/>tools_execution.py<br/>resolve_target_skill → headless session"]
        S1_SKILL["● SKILL.md<br/>━━━━━━━━━━<br/>generate-report<br/>Domain-generalized template<br/>instructs headless agent"]
        S1_ARTIFACTS["Experiment Artifacts<br/>━━━━━━━━━━<br/>results_path · *_metrics.json<br/>visualization-plan.md<br/>AUTOSKILLIT_TEMP/"]
        S1_VIZ["Visualization Pipeline<br/>━━━━━━━━━━<br/>.plot-venv<br/>matplotlib / seaborn / plotly<br/>per-figure scripts"]
        S1_REPORT["report.md<br/>━━━━━━━━━━<br/>research/YYYY-MM-DD/{slug}/<br/>committed to worktree"]
        S1_CAPTURE["context.report_path<br/>━━━━━━━━━━<br/>capture: report_path token<br/>on_success → test step"]
    end

    subgraph S2 ["SCENARIO 2: Domain-Adaptive Non-Software Report (Biology / Social Science)"]
        direction LR
        S2_RECIPE["Recipe Orchestrator<br/>━━━━━━━━━━<br/>research.yaml<br/>generate_report step<br/>(non-software domain)"]
        S2_SKILL["● SKILL.md<br/>━━━━━━━━━━<br/>Domain-adaptive ordering<br/>Language-agnostic env capture<br/>No Rust/cargo assumptions"]
        S2_ADAPT["Domain Adapter<br/>━━━━━━━━━━<br/>Biology → IMRaD order<br/>Economics / Social Science<br/>→ alternate section order"]
        S2_SECTIONS["Domain-Specific Sections<br/>━━━━━━━━━━<br/>Data Availability (optional)<br/>Discussion & Future Dirs<br/>Data Scope Statement (mandatory)"]
        S2_REPORT["report.md<br/>━━━━━━━━━━<br/>Domain-appropriate format<br/>committed to worktree"]
    end

    subgraph S3 ["SCENARIO 3: Inconclusive Experiment Report"]
        direction LR
        S3_ENSURE["ensure_results<br/>━━━━━━━━━━<br/>Retry exhaustion detected<br/>No usable experiment output"]
        S3_RUNSKILL["run_skill MCP Tool<br/>━━━━━━━━━━<br/>generate_report_inconclusive step<br/>--inconclusive flag"]
        S3_SKILL["● SKILL.md<br/>━━━━━━━━━━<br/>Inconclusive path:<br/>No failure framing<br/>Emphasize what was learned"]
        S3_REPORT["report.md<br/>━━━━━━━━━━<br/>What We Learned framing<br/>Figure specs under details<br/>committed to worktree"]
        S3_CAPTURE["context.report_path<br/>━━━━━━━━━━<br/>capture: report_path token<br/>on_success → test step"]
    end

    subgraph S4 ["SCENARIO 4: Contract Validation (CI Static Analysis)"]
        direction LR
        S4_TESTS["● test_generate_report<br/>_contracts.py<br/>━━━━━━━━━━<br/>tests/contracts/<br/>9 static content assertions"]
        S4_SKILL["● SKILL.md<br/>━━━━━━━━━━<br/>generate-report<br/>read as plain text"]
        S4_CHECKS["Domain Generalization Guards<br/>━━━━━━━━━━<br/>Data Scope Statement present<br/>Metrics Provenance present<br/>Gate Enforcement (no substitution)<br/>No Rust/cargo tooling<br/>biology + domain-adaptive ordering<br/>Data Availability section<br/>Discussion & Future Dirs"]
        S4_RESULT["task test-check<br/>━━━━━━━━━━<br/>PASS: all domain guards satisfied<br/>FAIL: regression in SKILL.md"]
    end

    %% SCENARIO 1 FLOW %%
    S1_RECIPE -->|"tool: run_skill"| S1_RUNSKILL
    S1_RUNSKILL -->|"loads instructions"| S1_SKILL
    S1_RUNSKILL -->|"reads"| S1_ARTIFACTS
    S1_SKILL -->|"instructs agent to synthesize"| S1_VIZ
    S1_ARTIFACTS -->|"feeds"| S1_VIZ
    S1_VIZ -->|"writes & commits"| S1_REPORT
    S1_REPORT -->|"emits report_path token"| S1_CAPTURE

    %% SCENARIO 2 FLOW %%
    S2_RECIPE -->|"tool: run_skill"| S2_SKILL
    S2_SKILL -->|"selects ordering"| S2_ADAPT
    S2_ADAPT -->|"structures"| S2_SECTIONS
    S2_SECTIONS -->|"writes & commits"| S2_REPORT

    %% SCENARIO 3 FLOW %%
    S3_ENSURE -->|"on_failure path"| S3_RUNSKILL
    S3_RUNSKILL -->|"loads instructions"| S3_SKILL
    S3_SKILL -->|"instructs inconclusive framing"| S3_REPORT
    S3_REPORT -->|"emits report_path token"| S3_CAPTURE

    %% SCENARIO 4 FLOW %%
    S4_TESTS -->|"reads SKILL.md text"| S4_SKILL
    S4_SKILL -->|"content asserted against"| S4_CHECKS
    S4_CHECKS -->|"produces"| S4_RESULT

    %% CLASS ASSIGNMENTS %%
    class S1_RECIPE,S2_RECIPE,S3_ENSURE cli;
    class S1_RUNSKILL,S3_RUNSKILL,S1_VIZ,S2_ADAPT,S2_SECTIONS handler;
    class S1_SKILL,S2_SKILL,S3_SKILL,S4_SKILL phase;
    class S1_ARTIFACTS,S1_CAPTURE,S3_CAPTURE stateNode;
    class S1_REPORT,S2_REPORT,S3_REPORT,S4_RESULT output;
    class S4_TESTS detector;
    class S4_CHECKS integration;

Module Dependency (Structural) Diagram

%%{init: {'flowchart': {'nodeSpacing': 45, 'rankSpacing': 65, 'curve': 'basis'}}}%%
graph TB
    %% CLASS DEFINITIONS %%
    classDef cli fill:#1a237e,stroke:#7986cb,stroke-width:2px,color:#fff;
    classDef stateNode fill:#004d40,stroke:#4db6ac,stroke-width:2px,color:#fff;
    classDef handler fill:#e65100,stroke:#ffb74d,stroke-width:2px,color:#fff;
    classDef phase fill:#6a1b9a,stroke:#ba68c8,stroke-width:2px,color:#fff;
    classDef output fill:#00695c,stroke:#4db6ac,stroke-width:2px,color:#fff;
    classDef detector fill:#b71c1c,stroke:#ef5350,stroke-width:2px,color:#fff;
    classDef integration fill:#c62828,stroke:#ef9a9a,stroke-width:2px,color:#fff;
    classDef gap fill:#ff6f00,stroke:#ffa726,stroke-width:2px,color:#000;

    subgraph L3 ["LAYER 3 — APPLICATION"]
        direction LR
        SERVER["server/<br/>━━━━━━━━━━<br/>tools_execution.py<br/>run_skill handler<br/>tools_kitchen.py"]
        CLI["cli/<br/>━━━━━━━━━━<br/>app.py · _cook.py<br/>_prompts.py"]
    end

    subgraph L2 ["LAYER 2 — BUSINESS LOGIC"]
        direction LR
        RECIPE["recipe/<br/>━━━━━━━━━━<br/>rules_skill_content.py<br/>rules_skills.py · validator.py<br/>contracts.py"]
        MIGRATION["migration/<br/>━━━━━━━━━━<br/>engine.py · _api.py<br/>loader.py"]
    end

    subgraph L1 ["LAYER 1 — INFRASTRUCTURE"]
        direction LR
        CONFIG["config/<br/>━━━━━━━━━━<br/>settings.py<br/>defaults.yaml<br/>ingredient_defaults.py"]
        PIPELINE["pipeline/<br/>━━━━━━━━━━<br/>context.py · gate.py<br/>audit.py · timings.py<br/>tokens.py"]
        EXECUTION["execution/<br/>━━━━━━━━━━<br/>headless.py · process.py<br/>ci.py · session.py<br/>quota.py"]
        WORKSPACE["workspace/<br/>━━━━━━━━━━<br/>skills.py (SkillResolver)<br/>session_skills.py<br/>worktree.py · clone.py"]
    end

    subgraph L0 ["LAYER 0 — FOUNDATION (fan-in: 102 files)"]
        CORE["core/<br/>━━━━━━━━━━<br/>types · io · paths · logging<br/>constants · kitchen_state<br/>claude_conventions"]
    end

    subgraph SKILL_LAYER ["SKILL ARTIFACTS (not Python modules)"]
        direction LR
        SKILL["● generate-report/<br/>━━━━━━━━━━<br/>SKILL.md<br/>domain-adaptive template<br/>biology · econ · engineering"]
        OTHER_SKILLS["skills/ · skills_extended/<br/>━━━━━━━━━━<br/>Tier 1/2/3 skill definitions<br/>open-kitchen · sous-chef<br/>arch-lens-* · exp-lens-*"]
    end

    subgraph HOOKS_LAYER ["HOOKS (standalone scripts)"]
        HOOKS["hooks/<br/>━━━━━━━━━━<br/>quota_guard · branch_protection<br/>pretty_output · skill_cmd_guard"]
        HOOK_REG["hook_registry.py<br/>━━━━━━━━━━<br/>HookDef · HOOK_REGISTRY<br/>generate_hooks_json"]
    end

    subgraph TEST_LAYER ["TEST LAYER"]
        direction LR
        CONTRACT_TEST["● test_generate_report<br/>_contracts.py<br/>━━━━━━━━━━<br/>tests/contracts/<br/>8 assertions (3 new)<br/>pure filesystem read"]
        ARCH_TESTS["tests/arch/<br/>━━━━━━━━━━<br/>test_layer_enforcement.py<br/>test_subpackage_isolation.py<br/>AST rule enforcement"]
    end

    %% ── L3 → L2 (valid downward) ──
    SERVER -->|"imports"| RECIPE
    SERVER -->|"imports"| MIGRATION
    SERVER -->|"imports"| WORKSPACE
    CLI -->|"imports"| RECIPE
    CLI -->|"imports"| MIGRATION
    CLI -->|"imports"| WORKSPACE

    %% ── L3 lateral (same level, deferred) ──
    CLI -.->|"deferred L3↔L3"| SERVER

    %% ── L3 → L1 (valid downward) ──
    SERVER -->|"imports"| CONFIG
    SERVER -->|"imports"| PIPELINE
    SERVER -->|"imports"| EXECUTION
    CLI -->|"imports"| CONFIG
    CLI -->|"imports"| EXECUTION

    %% ── L3 → Hooks (L3→scripts boundary) ──
    SERVER -.->|"narrow const import<br/>(boundary note)"| HOOKS

    %% ── L2 lateral (same level, deferred) ──
    RECIPE -.->|"deferred noqa (L2↔L2)<br/>7 call-site imports"| WORKSPACE
    MIGRATION -.->|"deferred (L2↔L2)<br/>6 method-body imports"| RECIPE

    %% ── L1 → L0 (valid downward) ──
    CONFIG -->|"imports"| CORE
    PIPELINE -->|"imports"| CORE
    EXECUTION -->|"imports"| CORE
    WORKSPACE -->|"imports"| CORE

    %% ── L1 TYPE_CHECKING-only upward refs (not runtime) ──
    EXECUTION -.->|"TYPE_CHECKING only<br/>(not runtime)"| CONFIG
    EXECUTION -.->|"TYPE_CHECKING only<br/>(not runtime)"| PIPELINE
    WORKSPACE -.->|"TYPE_CHECKING only<br/>(not runtime)"| CONFIG

    %% ── Hooks → Core ──
    HOOKS -->|"via hook_registry"| HOOK_REG
    HOOK_REG -->|"imports"| CORE

    %% ── Skill Resolution Chain ──
    WORKSPACE ==>|"discovers & loads"| SKILL
    WORKSPACE -->|"discovers & loads"| OTHER_SKILLS
    RECIPE ==>|"validates skill content"| SKILL
    RECIPE -->|"validates skill refs"| OTHER_SKILLS
    SERVER ==>|"invokes via run_skill"| SKILL

    %% ── Contract Test ──
    CONTRACT_TEST ==>|"reads SKILL.md<br/>(filesystem only,<br/>no module import)"| SKILL
    ARCH_TESTS -->|"AST-checks layer rules"| L1
    ARCH_TESTS -->|"AST-checks layer rules"| L0

    %% CLASS ASSIGNMENTS %%
    class SERVER,CLI cli;
    class RECIPE,MIGRATION phase;
    class CONFIG,PIPELINE,EXECUTION,WORKSPACE handler;
    class CORE stateNode;
    class SKILL,OTHER_SKILLS output;
    class HOOKS,HOOK_REG integration;
    class CONTRACT_TEST,ARCH_TESTS detector;

Process Flow (Physiological) Diagram

%%{init: {'flowchart': {'nodeSpacing': 40, 'rankSpacing': 50, 'curve': 'basis'}}}%%
flowchart TB
    %% CLASS DEFINITIONS %%
    classDef terminal fill:#1a237e,stroke:#7986cb,stroke-width:2px,color:#fff;
    classDef stateNode fill:#004d40,stroke:#4db6ac,stroke-width:2px,color:#fff;
    classDef handler fill:#e65100,stroke:#ffb74d,stroke-width:2px,color:#fff;
    classDef phase fill:#6a1b9a,stroke:#ba68c8,stroke-width:2px,color:#fff;
    classDef detector fill:#b71c1c,stroke:#ef5350,stroke-width:2px,color:#fff;
    classDef output fill:#00695c,stroke:#4db6ac,stroke-width:2px,color:#fff;

    %% TERMINALS %%
    START([START])
    COMPLETE([COMPLETE])
    ERROR([ERROR])

    subgraph Args ["Argument Parsing"]
        direction TB
        A1["worktree_path<br/>━━━━━━━━━━<br/>Abs path to worktree"]
        A2["results_path<br/>━━━━━━━━━━<br/>Abs path to experiment results"]
        A3{"--inconclusive?"}
        A4{"output-mode = local<br/>AND --issue-url?"}
    end

    subgraph Gather ["Step 1 — Gather Artifacts"]
        direction TB
        G1["Read experiment-plan.md<br/>━━━━━━━━━━<br/>AUTOSKILLIT_TEMP/experiment-plan.md"]
        G2["Read scope report<br/>━━━━━━━━━━<br/>AUTOSKILLIT_TEMP/scope/ (if present)"]
        G3["Read results file<br/>━━━━━━━━━━<br/>results_path arg"]
        G4["Read raw run data<br/>━━━━━━━━━━<br/>AUTOSKILLIT_TEMP/run-experiment/"]
        G5{"*_metrics.json<br/>files present?"}
        G6["Read metrics JSON files<br/>━━━━━━━━━━<br/>accuracy_metrics.json, etc."]
        G7["Scan experiment code<br/>━━━━━━━━━━<br/>scripts, fixtures, tools in worktree"]
    end

    subgraph IssueRef ["Step 1.5 — Issue Reference Header"]
        direction TB
        IR1["Parse issue number<br/>━━━━━━━━━━<br/>Last numeric segment of URL"]
        IR2["Prepend blockquote ref<br/>━━━━━━━━━━<br/>&gt; This research addresses Issue #N"]
    end

    subgraph ReportType ["Step 2 — Determine Report Type"]
        direction TB
        RT1{"--inconclusive flag<br/>or status = INCONCLUSIVE?"}
        RT2["Conclusive Report<br/>━━━━━━━━━━<br/>Full findings + recommendations"]
        RT3["Inconclusive Report<br/>━━━━━━━━━━<br/>Boundary conditions + what was learned<br/>Distinguish negative vs inconclusive"]
    end

    subgraph Viz ["Step 2.5 — Produce Visualizations"]
        direction TB
        V1{"visualization-plan.md<br/>exists?"}
        V2{"Zero figure specs<br/>in plan?"}
        V3["Create plot venv<br/>━━━━━━━━━━<br/>matplotlib + seaborn (+ plotly if needed)"]
        V4["For each figure-spec:<br/>━━━━━━━━━━<br/>Write fig{N}_{slug}.py script<br/>Run script → confirm output<br/>On failure: emit MISSING + continue"]
        V5["Commit scripts and images<br/>━━━━━━━━━━<br/>git add research/ && git commit"]
    end

    subgraph DomainOrder ["● Step 3 — Domain-Adaptive Section Ordering"]
        direction TB
        DO1{"Research domain?"}
        DO2["Engineering / Computational<br/>━━━━━━━━━━<br/>Exec Summary → Background →<br/>Methodology → Results →<br/>Observations → Analysis →<br/>What We Learned → Conclusions →<br/>Recommendations"]
        DO3["Biology / Biomedical<br/>━━━━━━━━━━<br/>IMRaD: Background → Methodology →<br/>Results → Analysis →<br/>Discussion and Future Directions<br/>(Nature-style: Methods to supplementary)"]
        DO4["Economics / Social Science<br/>━━━━━━━━━━<br/>Background → Methodology →<br/>Results → Analysis →<br/>Discussion and Future Directions"]
        DO5["Mandatory sections (all domains)<br/>━━━━━━━━━━<br/>Data Scope Statement<br/>Metrics Provenance Check<br/>Gate Enforcement<br/>What We Learned<br/>Exec Summary first / Appendices last"]
    end

    subgraph WriteReport ["Step 3 (cont.) — Write Report File"]
        direction TB
        WR1["Create research dir<br/>━━━━━━━━━━<br/>research/YYYY-MM-DD-{slug}/"]
        WR2["Validate metrics provenance<br/>━━━━━━━━━━<br/>Check timestamp + content relevance<br/>Disclose stale or irrelevant metrics"]
        WR3["Enforce hypothesis gates<br/>━━━━━━━━━━<br/>Use gate from experiment plan<br/>No threshold substitution"]
        WR4["● Write report.md<br/>━━━━━━━━━━<br/>incl. Data Availability section<br/>incl. Discussion or Recommendations<br/>(domain-adaptive framing)"]
    end

    subgraph Commit ["Step 4 — Commit and Emit"]
        direction TB
        C1["git add research/<br/>━━━━━━━━━━<br/>git commit: 'Add research report: {title}'"]
        C2["Emit report_path token<br/>━━━━━━━━━━<br/>report_path = {absolute path to report.md}"]
    end

    %% MAIN FLOW %%
    START --> A1
    START --> A2
    A1 & A2 --> A3
    A3 --> A4

    A4 -->|"yes"| IR1
    A4 -->|"no"| G1
    IR1 --> IR2 --> G1

    G1 --> G2 --> G3 --> G4 --> G5
    G5 -->|"yes"| G6
    G5 -->|"no"| G7
    G6 --> G7

    G7 --> RT1
    RT1 -->|"conclusive"| RT2
    RT1 -->|"inconclusive"| RT3
    RT2 & RT3 --> V1

    V1 -->|"no"| DO1
    V1 -->|"yes"| V2
    V2 -->|"empty plan"| DO1
    V2 -->|"has specs"| V3
    V3 --> V4 --> V5 --> DO1

    DO1 -->|"engineering default"| DO2
    DO1 -->|"biology/biomedical"| DO3
    DO1 -->|"economics/social science"| DO4
    DO2 & DO3 & DO4 --> DO5

    DO5 --> WR1 --> WR2 --> WR3 --> WR4

    WR4 --> C1 --> C2 --> COMPLETE

    WR2 -->|"unrecoverable artifact error"| ERROR

    %% CLASS ASSIGNMENTS %%
    class START,COMPLETE,ERROR terminal;
    class A1,A2 stateNode;
    class A3,A4,RT1,V1,V2,G5,DO1 stateNode;
    class G1,G2,G3,G4,G6,G7 handler;
    class IR1,IR2 handler;
    class RT2,RT3 handler;
    class V3,V4,V5 handler;
    class DO2,DO3,DO4 phase;
    class DO5 detector;
    class WR1,WR2,WR3 handler;
    class WR4 output;
    class C1,C2 output;

Closes #789

Implementation Plan

Plan file: /home/talon/projects/autoskillit-runs/impl-789-20260412-214910-831191/.autoskillit/temp/make-plan/generalize_generate_report_template_plan_2026-04-12_000000.md

🤖 Generated with Claude Code via AutoSkillit

Token Usage Summary

Step	uncached	output	cache_read	cache_write	count	time
plan	177	9.9k	658.2k	42.9k	1	6m 16s
verify	92	9.9k	399.3k	37.7k	1	3m 2s
implement	182	6.8k	882.8k	40.7k	1	2m 54s
fix	102	3.5k	356.0k	25.4k	1	3m 12s
prepare_pr	52	5.2k	146.9k	22.2k	1	1m 46s
run_arch_lenses	206	26.0k	616.3k	175.4k	3	12m 56s
compose_pr	75	9.6k	270.6k	34.3k	1	2m 46s
Total	886	71.0k	3.3M	378.6k		32m 55s

Trecek

AutoSkillit PR Review — Verdict: changes_requested (3 actionable, 3 require human decision)

tests/contracts/test_generate_report_contracts.py

src/autoskillit/skills_extended/generate-report/SKILL.md

Trecek

AutoSkillit review found 6 findings (3 actionable fixes + 3 requiring human decision). See inline comments. Verdict: changes_requested.

…ests Add four new contract tests to test_generate_report_contracts.py: - test_no_rust_specific_package_manager - test_domain_adaptive_ordering_guidance - test_data_availability_section_supported - test_recommendations_or_discussion_framing Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

…domains Four targeted changes to SKILL.md make the report template domain-adaptive without breaking existing software engineering reports: 1. Remove Rust-specific `cargo tree` example from Environment section; use language-agnostic examples (pip freeze, conda list, lock files). 2. Add Domain-Adaptive Section Ordering guidance in Step 3 covering engineering (default), biology/biomedical (IMRaD), and economics/ social science ordering conventions. 3. Add optional Data Availability section between Recommendations and Appendix for biology/medical/social science journal requirements. 4. Update Recommendations heading to allow "Discussion and Future Directions" as an alternative framing for non-engineering domains. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

…in-adaptive' Reviewer flagged that `assert "domain" in lower` provides no signal since the word appears throughout any technical documentation. Replace with `assert "domain-adaptive" in lower` which targets the specific guidance phrase added in this branch. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

…diction, and mandatory sections Three related corrections to the Domain-Adaptive Section Ordering in SKILL.md: 1. Biology ordering: remove non-standard 'Analysis' step (standard IMRaD is Introduction→Methods→Results→Discussion); update label from 'Follow IMRaD' to 'Adapted from IMRaD' and add 'What We Learned' to the ordering. 2. Executive Summary rule: add academic-journal exception — biology/medical/ social science submissions may replace Executive Summary with a structured Abstract. 3. Economics/social science ordering: add 'What We Learned' to resolve the contradiction with the mandatory-sections rule. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

Reviewer noted that italic markup inside an H2 heading renders unexpectedly in some Markdown processors. Separate the alternative-framing note into its own paragraph below the heading. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

Trecek commented Apr 13, 2026

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Trecek and others added 5 commits April 12, 2026 23:40

Trecek force-pushed the generalize-generate-report-template-for-non-software-researc/789 branch from 3e30c0c to dca18f8 Compare April 13, 2026 06:41

Trecek added this pull request to the merge queue Apr 13, 2026

Merged via the queue into integration with commit 840108a Apr 13, 2026
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Trecek deleted the generalize-generate-report-template-for-non-software-researc/789 branch April 13, 2026 07:02

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Implementation Plan: Generalize generate-report Template for Non-Software Research#796

Implementation Plan: Generalize generate-report Template for Non-Software Research#796
Trecek merged 5 commits intointegrationfrom
generalize-generate-report-template-for-non-software-researc/789

Trecek commented Apr 13, 2026 •

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Trecek commented Apr 13, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

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Trecek commented Apr 13, 2026 •

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