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Remove outdated sentence about New Scale Pathfinder MPM in ephys link tutorial #126

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Merged
kjy5 merged 3 commits into from
Oct 22, 2025
Merged

Remove outdated sentence about New Scale Pathfinder MPM in ephys link tutorial #126

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ddca462
Initial plan
Copilot Oct 22, 2025
18c06b3
Initial plan: Remove unnecessary sentence from ephys link tutorial
Copilot Oct 22, 2025
28d5b2c
Remove unnecessary sentence about New Scale Pathfinder MPM in ephys l…
Copilot Oct 22, 2025
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1 change: 1 addition & 0 deletions source/_autosummary/oursin.atlas.ontology.rst
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Expand Up @@ -19,6 +19,7 @@ oursin.atlas.ontology
:nosignatures:

Atlas
CustomAtlas
Structure


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2 changes: 1 addition & 1 deletion source/_autosummary/oursin.atlas.rst
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Expand Up @@ -26,5 +26,5 @@
:template: custom-module-template.rst
:recursive:

oursin.atlas.ccf
ontology

20 changes: 14 additions & 6 deletions source/_autosummary/oursin.camera.rst
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Expand Up @@ -14,17 +14,25 @@
.. autosummary::
:nosignatures:

set_pan
set_position
set_rotation
set_target
set_target_area
set_zoom
clear
on_camera_img
on_camera_img_meta
set_brain_rotation
set_light_camera
set_light_rotation
setup





.. rubric:: Classes

.. autosummary::
:nosignatures:

Camera




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6 changes: 6 additions & 0 deletions source/_autosummary/oursin.client.rst
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Expand Up @@ -20,6 +20,12 @@
connected
disconnect
message
receive_camera_img
receive_camera_img_meta
receive_dock_callback
receive_neuron_callback
receive_volume_click
urchin_loaded_callback



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6 changes: 3 additions & 3 deletions source/_autosummary/oursin.colors.rst
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oursin.colors
oursin.colors
=============

.. automodule:: oursin.colors
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:template: custom-module-template.rst
:recursive:

oursin.colors.colors
oursin.colors.xkcd_rgb
colors
xkcd_rgb

10 changes: 8 additions & 2 deletions source/_autosummary/oursin.lines.rst
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Expand Up @@ -14,15 +14,21 @@
.. autosummary::
:nosignatures:

clear
create
delete
set_color
set_position





.. rubric:: Classes

.. autosummary::
:nosignatures:

Line




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1 change: 1 addition & 0 deletions source/_autosummary/oursin.meshes.rst
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Expand Up @@ -14,6 +14,7 @@
.. autosummary::
:nosignatures:

clear
create
delete
set_colors
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6 changes: 1 addition & 5 deletions source/_autosummary/oursin.particles.rst
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Expand Up @@ -15,10 +15,6 @@
:nosignatures:

clear
create
set_colors
set_positions
set_sizes



Expand All @@ -29,7 +25,7 @@
.. autosummary::
:nosignatures:

Particle
ParticleSystem



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16 changes: 12 additions & 4 deletions source/_autosummary/oursin.probes.rst
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.. autosummary::
:nosignatures:

clear
create
delete
set_angle
set_color
set_position
set_size
set_angles
set_colors
set_positions
set_scales





.. rubric:: Classes

.. autosummary::
:nosignatures:

Probe




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6 changes: 1 addition & 5 deletions source/_autosummary/oursin.renderer.rst
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Expand Up @@ -15,11 +15,7 @@
:nosignatures:

clear
clear_areas
clear_neurons
clear_probes
clear_texts
clear_volumes
is_running_in_colab
setup


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17 changes: 12 additions & 5 deletions source/_autosummary/oursin.text.rst
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Expand Up @@ -14,17 +14,24 @@
.. autosummary::
:nosignatures:

clear
create
delete
set_color
set_position
set_size
set_text
set_colors
set_font_sizes
set_positions
set_texts





.. rubric:: Classes

.. autosummary::
:nosignatures:

Text




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41 changes: 41 additions & 0 deletions source/_autosummary/oursin.texture.rst
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oursin.texture
==============

.. automodule:: oursin.texture







.. rubric:: Functions

.. autosummary::
:nosignatures:

clear
create
delete
set_images
set_positions





.. rubric:: Classes

.. autosummary::
:nosignatures:

Texture









50 changes: 50 additions & 0 deletions source/_autosummary/oursin.utils.rst
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oursin.utils
============

.. automodule:: oursin.utils







.. rubric:: Functions

.. autosummary::
:nosignatures:

formatted_color
formatted_vector2
formatted_vector3
hex_to_rgb
list_of_list2vector3
rgb_to_hex
rgba_to_hex
sanitize_color
sanitize_float
sanitize_list
sanitize_material
sanitize_side
sanitize_string
sanitize_vector3





.. rubric:: Classes

.. autosummary::
:nosignatures:

Side









21 changes: 13 additions & 8 deletions source/_autosummary/oursin.volumes.rst
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oursin.volumes
oursin.volumes
==============

.. automodule:: oursin.volumes
Expand All @@ -14,18 +14,23 @@ oursin.volumes
.. autosummary::
:nosignatures:

create
delete
set_colormap
set_data
set_slice_data
set_visibility
set_visibility_allen
clear
clear_clicks
colormap
compress_volume
save_clicks





.. rubric:: Classes

.. autosummary::
:nosignatures:

Volume




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3 changes: 0 additions & 3 deletions source/pinpoint/tutorials/tutorial_ephys_link.md
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Expand Up @@ -109,9 +109,6 @@ stop button feature.

## 2. Mirror the Positions of _in vivo_ Probes in Pinpoint

This step is not required for New Scale Pathfinder MPM connections. [See below
for details](mpm-no-need-config).

![Spawn probes in the planner scene](../../_static/images/tutorial/ephys_link/ephys_link_spawn.png)

1. Spawn the corresponding probes in the planner scene.
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