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MSstatsTMT
MSstatsTMT PublicR-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
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MSstatsPTM
MSstatsPTM PublicPost Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments
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Repositories
- MSstatsConvertLLM Public
In development package to replace the converters in MSstatsConvert with (local) LLMs. This work was present at ASMS 2026.
- MSstatsResponse Public
- MSstatsBioNet Public
- MSstatsTMT Public
R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
- MSstatsBig Public
MSstats functionality to handle large DIA datasets. Replaces standard MSstats converters with MSstatsBig converters.
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