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ClinicalAnalyticsPlatform

Prerequisites for Local Deployment

  • minikube >= v1.37.0
  • kubectl: Client-Version >= v1.34.1, Kustomize Version: v5.7.1, Server Version: v1.34.0
  • Container Runtime: e.g. Docker >= v27.3.1
  • Influx CLI >= v2.7.5
  • just >= 1.37.0

Recommended Tools for easy Monitoring

  • k9s >= v0.50.15 (monitor the cluster)

Start-up

Start minikube, make sure you allow minikube to access enough resources (especially when deploying Apache Kafka). Due to Apache Kafka's heavy memory consumption, you should at least assign 7GB of memory. To tune performance, you can also assign more compute resources by setting the --cpus-flag (e.g. --cpus=4).

minikube start --memory=8192

Next, please set a namespace within the cluster, which logically splits the cluster. Please don't forget to set the -n-flag to access/apply anything in the namespace. Otherwise kubectl will not be able to find the requested pod/deployment/service.

kubectl create namespace <namespace>

Deploying the Services

To deploy Kafka execute following command in the root of the project

kubectl apply -f 'https://strimzi.io/install/latest?namespace=<namespace>'
kubectl apply -f ./k8s/kafka/kafka.yml -n <namespace>

To deploy InfluxDB 2.7 execute following command in the root of the project:

kubectl apply -f ./k8s/influxdb/influx-pvc.yml -n <namespace>
kubectl apply -f ./k8s/influxdb/influx.yml -n <namespace>

Please forward the Influx-Port in a new Terminal-Tab, so you can access the shell of Influx on your local machine:

kubectl port-forward svc/influx-service -n <namespace> 8086:8086

Deprecated -> Only for Influx1:12 To access the Influx-Shell please enter following command in another Terminal-Tab:

influx v1 shell

Alternative: Just

For ease of use, you could also use the just commands to deploy everything: This command starts a minikube cluster with --cpus=4 and --memory=7000:

just start <namespace>

This command deploys a Strimzi-Kafka-Cluster, please use the same namespace as above:

just kafka <namespace>

This command deploys influx:2.7 (might migrate back to 1.12), please use the namespace as above:

just influx <namespace>

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