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Add fmri_surface_data object for CIFTI/GIFTI surface & grayordinate data - #86

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canlab_fmri_surface_object

Jul 13, 2026

Merged

Add fmri_surface_data object for CIFTI/GIFTI surface & grayordinate data#86
torwager merged 30 commits into
masterfrom
canlab_fmri_surface_object

Commits on Jul 9, 2026
- Add fmri_surface_data object for CIFTI/GIFTI surface & grayordinate data
  
  torwager
  and
  claude
  committed
  bc3487f
- Add fmri_surface_data docs, workflow how-to, and a CIFTI sample map
  
  torwager
  and
  claude
  committed
  8afa4cf
- Review pass: make fmri_surface_data examples runnable and docs accurate
  
  torwager
  and
  claude
  committed
  f178d11
- fmri_surface_data: mask volume-only methods; redirect orthviews/montage/slices; doc links
  
  torwager
  and
  claude
  committed
  6f72e90
- fmri_surface_data: rename property intent -> imagetype; label_table now a MATLAB table
  
  torwager
  and
  claude
  committed
  4dd32b2
- fmri_surface_data: harmonize surface() colours with the volume visualization pipeline
  
  torwager
  and
  claude
  committed
  1d0a050
- Integrate fmri_surface_data into the stateful fmridisplay (surface-native layers)
  
  torwager
  and
  claude
  committed
  1827bb8
Commits on Jul 10, 2026
Commits on Jul 11, 2026
- load_image_set: add surface/volumetric map sets and a categorized 'list'
  
  torwager
  and
  claude
  committed
  a5a6ea2
- load_atlas: register Tian subcortical scale atlases and add a categorized 'list'
  
  torwager
  and
  claude
  committed
  79461c6
- Docs + tests for the load_image_set / load_atlas registry updates
  
  torwager
  and
  claude
  committed
  db122a6
- Test: skip canlab_test_load_registries under GitHub Actions
  
  torwager
  and
  claude
  committed
  0250cfc
- Test: include canlab_test_load_registries in the GitHub Actions suite
  
  torwager
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  claude
  committed
  213cc4e
Commits on Jul 12, 2026
- Docs: make explicit that vol2surf/surf2vol ARE the CBIG registration-fusion mappers
  
  torwager
  and
  claude
  committed
  e6f47ad
- Add resample_surface: native surface-to-surface resampling for fmri_surface_data
  
  torwager
  and
  claude
  committed
  597a6d2
- Add onavg (OpenNeuro Average) as a resample_surface template space
  
  torwager
  and
  claude
  committed
  57ea273
- Surface viz: auto-resample surface data onto a mismatched standard mesh
  
  torwager
  and
  claude
  committed
  5db9bd3
- Surface viz: render surface data onto ARBITRARY MNI isosurfaces via volume projection
  
  torwager
  and
  claude
  committed
  bae10f9
- Surface viz: 'unique'/'solid' color modes + a single source of truth for auto-selection
  
  torwager
  and
  claude
  committed
  610030f
- render_blobs: ignore 'unique'/'solid' color-mode flags; controller bg -> light sea green
  
  torwager
  and
  claude
  committed
  6ea9987
- fmridisplay controller: never change the current figure (montage axes consistency)
  
  torwager
  and
  claude
  committed
  b660f23
- fmridisplay controller: working 'unique (per region)' colormap dropdown item
  
  torwager
  and
  claude
  committed
  c2fc3da
- region/surface: 'unique'/'solid' colour modes + auto unique for atlases
  
  torwager
  and
  claude
  committed
  92f1d30

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Add fmri_surface_data object for CIFTI/GIFTI surface & grayordinate data - #86

Add fmri_surface_data object for CIFTI/GIFTI surface & grayordinate data#86
torwager merged 30 commits into
masterfrom
canlab_fmri_surface_object

Commits on Jul 9, 2026

Add fmri_surface_data object for CIFTI/GIFTI surface & grayordinate data

Add fmri_surface_data docs, workflow how-to, and a CIFTI sample map

Review pass: make fmri_surface_data examples runnable and docs accurate

fmri_surface_data: mask volume-only methods; redirect orthviews/montage/slices; doc links

fmri_surface_data: rename property intent -> imagetype; label_table now a MATLAB table

fmri_surface_data: harmonize surface() colours with the volume visualization pipeline

Integrate fmri_surface_data into the stateful fmridisplay (surface-native layers)

Commits on Jul 10, 2026

Surface viz: surface() returns a managed fmridisplay and renders under the controller

Tests: cover managed surface() return, hemisphere correctness, space-mismatch warning

Docs: document surface() managed return, set_colormap workflow, space-mismatch behavior

Surface viz: make the managed surface layer fully stateful (controller, opacity, rethreshold, colormap)

Surface viz: render subcortical grayordinates for mixed objects (surface + montage)

Tests + docs: managed surface layer statefulness and subcortical rendering

Surface viz: strip view-selectors before render_blobs; keep the controller in sync when adding surfaces

Colormap: collapse a 4-element split cmaprange to full span for single/continuous maps

Commits on Jul 11, 2026

load_image_set: add surface/volumetric map sets and a categorized 'list'

load_atlas: register Tian subcortical scale atlases and add a categorized 'list'

Docs + tests for the load_image_set / load_atlas registry updates

Test: skip canlab_test_load_registries under GitHub Actions

Test: include canlab_test_load_registries in the GitHub Actions suite

Commits on Jul 12, 2026

Docs: make explicit that vol2surf/surf2vol ARE the CBIG registration-fusion mappers

Add resample_surface: native surface-to-surface resampling for fmri_surface_data

Add onavg (OpenNeuro Average) as a resample_surface template space

Surface viz: auto-resample surface data onto a mismatched standard mesh

Surface viz: render surface data onto ARBITRARY MNI isosurfaces via volume projection

Surface viz: 'unique'/'solid' color modes + a single source of truth for auto-selection

render_blobs: ignore 'unique'/'solid' color-mode flags; controller bg -> light sea green

fmridisplay controller: never change the current figure (montage axes consistency)

fmridisplay controller: working 'unique (per region)' colormap dropdown item

region/surface: 'unique'/'solid' colour modes + auto unique for atlases