Harden PyHealth 2.0: acceptance criteria, test guards, docs alignment - #1

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capccode wants to merge 33 commits into

pyhealth-2.0-hardening

Commits on Feb 24, 2026

fix this broken link (#870)

jhnwu3
and
John Wu
authored
1ef1544
Fixed issues in reproducing inference results in TFM-Tokenizer (#860)
Jathurshan0330
authored
436bba7

Commits on Feb 28, 2026

tldr; add improved check to task and dataset cache (#876)
jhnwu3
authored
f626677

Commits on Mar 7, 2026

Add GraphCare model using pyhealth.graph infrastructure (#882)

joshuasteier
and
Steier
authored
07cf64d

Commits on Mar 12, 2026

small fix so that agents no longer get confused that its 1.14 installed (#888)
jhnwu3
authored
f3892c0

Commits on Mar 13, 2026

Update/core docs (#889)
jhnwu3
authored
b29ad0d

Commits on Mar 15, 2026

[Conformal EEG] TUEV/TUAB Compatibility (#894)
lehendo
authored
2d12b1f

Commits on Mar 16, 2026

Updated Conformal Test Scripts (#895)
lehendo
authored
c746b24

Commits on Mar 22, 2026

Commits on Mar 23, 2026

making the PyHealth Research Initiative page way less confusing and dense (#907)
jhnwu3
authored
4cc526f

Commits on Mar 25, 2026

add new reference to the top of the pyhealth page for our new project page so users who join can hopefully find a more easy to navigate page that isn't so documentation heavy to find what they're l…
jhnwu3
authored
f4b65d7

Commits on Mar 27, 2026

Commits on Mar 30, 2026

Add/mm retain adacare (#885)
jhnwu3
authored
2ed2ba4
concare fix (#920)
jhnwu3
authored
ed56212

Commits on Apr 1, 2026

fix pixi warning and version format for backend (#917)
plandes
authored
e857c91

Commits on Apr 8, 2026

fix: remove deprecated code_mapping, dev, refresh_cache from examples (#935)
haoyu-haoyu
authored
d7641e0

Commits on Apr 12, 2026

Fix Interpretability Methods `target_class_idx` (#926)
Logiquo
authored
39b86e4

Commits on Apr 13, 2026

Commits on Apr 14, 2026

Dev/grasp full pipeline (#905)

authored
7d95dea

Commits on Apr 19, 2026

Commits on Apr 25, 2026

Fix drug recommandation drug code and padding. (#1138)
Logiquo
authored
1262a76

Commits on Apr 26, 2026

Fix sparsemax in AdaCare (#1139)
Logiquo
authored
3fcf8d2

Commits on May 4, 2026

reinitialize tutorials for documentation as old tutorials died with UIUC purge (#1143)
jhnwu3
authored
cb75b5c

Commits on May 12, 2026

Colab Tutorial re-link (#1146)
janezdu
authored
acaf7b7

Commits on Jun 7, 2026

Add synthetic-EHR generative evaluation metrics (#1148)

chufangao
and
claude
authored
53fa513
transfer FHIR pipeline to branch (#1155)

jhnwu3
and
claude
authored
fb481d9

Commits on Jun 11, 2026

Harden PyHealth 2.0: acceptance criteria, test guards, docs alignment
claude
committed
93420a7