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Inferring pseudobulk batch effects

Status: Open.

#31 In const-ae/lemur;

· rached-97 opened on Jun 20, 2026

lemur::align_harmony causes an error with recent versions of harmony

Status: Open.

#29 In const-ae/lemur;

· wolfganghuber opened on May 14, 2026

analysis within subset of cells

Status: Open.

#25 In const-ae/lemur;

· Shubhra-B opened on Nov 20, 2025

Multi-conditions and multi-batches

Status: Open.

#23 In const-ae/lemur;

· xye1813 opened on May 28, 2025

Opposite signs in lfc and did_lfc from find_de_neighborhood

Status: Open.

#22 In const-ae/lemur;

· chibatoshikaze opened on Apr 18, 2025

lemur function force conversion to dense matrix

Status: Open.

#19 In const-ae/lemur;

· edg1983 opened on Nov 27, 2024

Differential State analysis?

Status: Open.

#15 In const-ae/lemur;

· castro019 opened on Apr 22, 2024

Error in fit$ridge_penalty

Status: Open.

#14 In const-ae/lemur;

· BiotechPedro opened on Apr 4, 2024

Cell cycle regression and n_embedding tuning

Status: Open.

#11 In const-ae/lemur;

· BiotechPedro opened on Jan 11, 2024

Expectations for UMAP of embeddings

Status: Open.

#10 In const-ae/lemur;

· Thapeachydude opened on Dec 4, 2023

collinearity error with control vs treatment test for multiple subjects

Status: Open.

#9 In const-ae/lemur;

· shobhitagrawal1 opened on Oct 15, 2023

>2 conditions

Status: Open.

#4 In const-ae/lemur;

· lucafusarbassini opened on Apr 18, 2023