Data Science in Systems Biology
- 40 followers
- Freising, Germany
- https://daisybio.de
- company/daisybio
- markus.list@tum.de
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data-leakage-ppi-prediction
data-leakage-ppi-prediction PublicCode associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
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OpenLabFramework
OpenLabFramework Public archiveA open source framework for research data management. DEMO at https://dockerhts.compbio.sdu.dk/OpenLabFramework/login/auth
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TF-Prioritizer
TF-Prioritizer PublicBioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data
Java 14
Repositories
- drevalpy Public
DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.
- SPONGE-web-frontend Public
- SPONGE-web-backend Public
- IHEC_RNA-Seq_sizeFactors Public
- domainsplit Public
A nextflow pipeline to split domain-domain interaction data into train, validation, and test while reducing data leakage and bias.
- SPONGE Public
Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference
- circRNA_benchmarking Public
- teff-treg-satb1-analysis Public
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