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Type all Python modules and add invariant gates - #168
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Follow-up to #165 and #167.
dotmatch/quickdnamodule onto the strict mypy + pyright gate and remove all module exclusions.CrisprCountMatrix/GuideCounttypes betweencount_ioandcli.make compat39for the Python 3.9 runtime import and example/doctest suites.isprintablechecks (stream +50.4% vs main 91e162b on the local harness).multiqc>=1.22, link the typing guide from README/CONTRIBUTING, and keep release gates free of dev-only tools.Local gates:
make typecheck(40 files),make lint,make examples-test,make compat39, 2110 pytest passed, wheel/sdist checks passed.