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Dev - #4

Merged

ecrum19 merged 19 commits into

mainfrom

dev

Sep 4, 2026

Merged

Dev#4
ecrum19 merged 19 commits into
mainfrom
dev

Commits on Aug 27, 2026
- two bug fixes
  ecrum19
  committed
  e8e19bf
- added hdt/cottas index-only functionality
  ecrum19
  committed
  ef12512
- fix full mode fail on hdt-index failure
  ecrum19
  committed
  9506141
- hdt indexing feature fix
  ecrum19
  committed
  8c11f83
Commits on Aug 29, 2026
- fix partition bug with big compressed intermediates
  ecrum19
  committed
  0d4f7ce
Commits on Sep 1, 2026
- add condensed mode for large multi-sample VCF knowledge representation
  ecrum19
  committed
  acc079b
Commits on Sep 2, 2026
- remove legacy java hdtcat invocation
  ecrum19
  committed
  5caef5d
- improved condensed COTTAS index generation workflow
  ecrum19
  committed
  87ad26d
Commits on Sep 3, 2026
- improved condensed COTTAS index generation workflow 2
  ecrum19
  committed
  7f46113
- cottas condensed index fix
  ecrum19
  committed
  bbae36c
- cottas condensed index fix 2
  ecrum19
  committed
  b6d17c0
- cottas condensed index fix and loading bar addition
  ecrum19
  committed
  a3aec0f
- increased upper limit of memory allocation for cottas compression
  ecrum19
  committed
  ed8c9ef
- increased upper limit of memory allocation for cottas compression
  ecrum19
  committed
  6a5b549
Commits on Sep 4, 2026
- added validation mode with test queries
  ecrum19
  committed
  fd82964
- validation mode improvements and addition of quiet run mode
  ecrum19
  committed
  6cbbe6d
- repo cleaning and small bug fixes
  ecrum19
  committed
  309e67f
- extensive improvement of validation suite and general cleaning
  ecrum19
  committed
  ed50c83
- add multi-engine validation for benchmarking
  ecrum19
  committed
  d81cddf

Commits

Commits on Aug 27, 2026

Commits on Aug 29, 2026

Commits on Sep 1, 2026

Commits on Sep 2, 2026

Commits on Sep 3, 2026

Commits on Sep 4, 2026