RNAp2 -- RNA-seq Analysis Platform v2.0

Author: RNAp2 Author

New in v2.0

• GO and KEGG pathway enrichment (clusterProfiler)
• Single-gene expression viewer with box plots
• Multi-factor design support (e.g., ~ batch + condition)
• RLE (Relative Log Expression) plots for batch assessment
• Excel workbook export with multiple sheets

Dependencies

install.packages(c("shiny", "shinydashboard", "shinyWidgets", "DT", "plotly",
                    "ggplot2", "pheatmap", "RColorBrewer", "viridis", "gridExtra",
                    "openxlsx"))

BiocManager::install(c("DESeq2", "EnhancedVolcano", "clusterProfiler",
                        "org.Hs.eg.db", "VariantAnnotation"))

Run

shiny::runApp("app.R")

License

GPLv3