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julianneyang/README.md

Hi there ๐Ÿ‘‹

I'm Julianne. I am excited about the potential that bioinformatics holds for transforming the way we understand and approach research in the life sciences. Biologists are always producing data, generating large lists of proteins, genes, and microbes of interest. However, transforming these lists into a comprehensive understanding of critical pathways and processes driving disease has proven to be extremely challenging. By integrating multiple types of sequencing data, such as whole genome sequencing, RNA sequencing, and metagenomics sequencing, we can obtain a comprehensive view of the molecular processes that drive disease. This has great potential for identifying new therapeutic targets and developing more effective treatments for a wide range of diseases.

  • ๐Ÿ”ญ I'm currently having an awesome time working on ncRNA sequencing data as a postdoctoral fellow at Merck.
  • ๐Ÿ’ป I'm best described as a bioinformatics scientist. Right now, I'm excited about building scalable and reproducible workflows with Nextflow, and about making bioinformatics analyses more accessible with RShiny.
  • ๐Ÿ’ฉ Previously, I worked on investigating the relationship between genetic risk for disease and the gut microbiome.
  • ๐ŸŒฑ I am enthusiastic about expanding my skillset to include other data modalities. Currently working on spatial transcriptomics data!
  • ๐Ÿ‘ฏ Feel free to connect with me on LinkedIn!
  • Other things about me: cat lady ๐Ÿฑ๐Ÿฑ sustainable living ๐Ÿƒ hobbyist artist ๐Ÿ–Œ๏ธ homebody ๐Ÿ  fighting spirit ๐Ÿ’ช

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  1. miRQuest miRQuest Public

    Forked from MSDLLCpapers/miRQuest

    An RShiny app for the analysis of high-throughput miRNA sequencing data

    R

  2. biotindeficiency biotindeficiency Public

    Scripts to reproduce analysis and figures in Yang, J.C.; Jacobs, J.P.; Hwang, M.; Sabui, S.; Liang, F.; Said, H.M.; Skupsky, J. Biotin Deficiency Induces Intestinal Dysbiosis Associated with an Infโ€ฆ

    R

  3. metagenomicsonhoffman metagenomicsonhoffman Public

    Jacobs Lab UCLA : Preprocess shotgun metagenomics data on the UCLA supercomputer, using either Biobakery tools or Kraken/Bracken.

    Shell 5

  4. transcriptomicsonhoffman transcriptomicsonhoffman Public

    Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a diโ€ฆ

    R

  5. jacobslabucla/microbiome.biogeography jacobslabucla/microbiome.biogeography Public

    Scripts used in mouse biogeography project.

    R

  6. jacobslabucla/slccolon jacobslabucla/slccolon Public

    R 1