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Fix stain-for-reg fallback when spim_templates exists but has no matching stains #115

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Merged
akhanf merged 2 commits into from
Mar 7, 2026
Merged

Fix stain-for-reg fallback when spim_templates exists but has no matching stains #115

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Copilot Mar 4, 2026
c8b69df
Fix stain selection fallback when spim_templates exists but has no ma…
Copilot Mar 4, 2026
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2 changes: 1 addition & 1 deletion spimquant/workflow/Snakefile
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Original file line number Diff line number Diff line change
Expand Up @@ -60,7 +60,7 @@ if spim_templates is not None:
use_spim_template = True
break

else:
if not use_spim_template:
for stain in config["stains_for_reg"]:
if stain in stains:
stain_for_reg = stain
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