All pull requests

Pull requests

• jacobian: build an if() condition's ITE chain without sympy's set theory (#540)

  #1152·Montana opened Oct 20, 2026Contributor·

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• steady_state: add criterion="scaled", a convergence test in the model's units (#1001)

  #1151·Montana opened Oct 20, 2026Contributor·

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• events: fire a trigger that leaves its start threshold at any order (#934)

  #1150·wshlavacek opened Oct 19, 2026Collaborator·

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• simulator: run a batch row that pins a derived parameter on code built for it (#961)

  #1149·Montana opened Oct 19, 2026Contributor·

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• roots: step on through a bend root whose if() branch is off (#1147)

  #1148·Montana opened Oct 19, 2026Contributor·

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• cvode: widen a state switch's reach by the error its steps have added (#1025)

  #1146·Montana opened Oct 19, 2026Contributor·

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• sbml: write a size's jump through a diamond of rules in linear time (#1124)

  #1145·Montana opened Oct 19, 2026Contributor·

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• jacobian: inline a diamond of rules through sympy once it passes a length (#1124)

  #1144·Montana opened Oct 19, 2026Contributor·

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• jax: differentiate a dilution term through the rate it reads (#1124)

  #1143·Montana opened Oct 19, 2026Contributor·

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• cvode: stop logging a spent step batch as an error (#1124)

  #1142·Montana opened Oct 19, 2026Contributor·

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• steady_state: refuse by name an output that reads a species mask= left out (#1124)

  #1140·Montana opened Oct 19, 2026Contributor·

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• sbml: read rateOf(x) as moving where x does, not as the clock (#1124)

  #1138·Montana opened Oct 19, 2026Contributor·

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• sbml: write out a call to a function that reads rateOf, with its argument (#1124)

  #1137·Montana opened Oct 19, 2026Contributor·

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• simulator: refuse sensitivity_ic by name where the analytic sens RHS is declined (#1124)

  #1136·Montana opened Oct 19, 2026Contributor·

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• sbml: read an event resize through a diamond of rules by named functions (#1124)

  #1135·Montana opened Oct 19, 2026Contributor·

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• sbml: refuse sizes whose jump conditions read each other's concentrations (#1124)

  #1134·Montana opened Oct 19, 2026Contributor·

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• events: fire a state trigger that crosses on an output sample in its row (#1124)

  #1133·Montana opened Oct 19, 2026Contributor·

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• sbml: rescale once where two size jumps land on one instant (#1124)

  #1132·Montana opened Oct 19, 2026Contributor·

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• run: differentiate a bend in the sensitivity RHS (#1126)

  #1131·Montana opened Oct 19, 2026Contributor·

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• roots: read a % b as mod(a, b), so a % pulse gets its stops and roots (#1127)

  #1129·Montana opened Oct 19, 2026Contributor·

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• rm: run a model that reads time() on elapsed time, with time() offset by t_start (#1063)

  #1109·Montana opened Oct 18, 2026Contributor·

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• sbml: register a condition reached through a function definition once (#1082)

  #1106·Montana opened Oct 18, 2026Contributor·

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• nightly: count a stochastic ensemble in bngsim's wall time (#901)

  #1105·Montana opened Oct 18, 2026Contributor·

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• steady_state: confirm a differenced Jacobian's columns at a second step, or refuse them (#1002)

  #1100·Montana opened Oct 18, 2026Contributor·

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• cvode: sample the restart test's step halving toward the root as well (#907)

  #1097·Montana opened Oct 18, 2026Contributor·

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