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Pull requests: loculus-project/loculus

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Pull requests list

tips for agents on running integration tests documentation Improvements or additions to documentation e2e E2E test related
#5884 opened Jan 27, 2026 by theosanderson • Draft
3 tasks
fix(prepro, config, integration tests): fix clade assignment for multi-pathogen case and add to integration tests e2e E2E test related preprocessing Issues related to the preprocessing component preview Triggers a deployment to argocd
#5883 opened Jan 27, 2026 by anna-parker Loading…
3 tasks done
1
9
feat(website): add feature to search multiple string fields deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd website Tasks related to the web application
#5881 opened Jan 26, 2026 by chaoran-chen Loading…
2 tasks done
1
@chaoran-chen
15
feat(website): add copy and download buttons for sequences on details… website Tasks related to the web application
#5880 opened Jan 26, 2026 by theosanderson • Draft
3 tasks
1
fix(website): Standardise to sentence case in remaining UI elements website Tasks related to the web application
#5876 opened Jan 22, 2026 by theosanderson Loading…
1
1
feat(ingest): group upgraded sequence entries with their old assemblies ingest Ingest pipeline
#5873 opened Jan 22, 2026 by fhennig Loading…
2 tasks done
1
@fhennig
1
chore(deps-dev): bump the minor group across 1 directory with 7 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#5869 opened Jan 21, 2026 by dependabot bot Loading…
fix(website): change files icon on review page to be more distinct website Tasks related to the web application
#5864 opened Jan 21, 2026 by theosanderson • Draft
3 tasks
1
[WIP] Fix unit tests in pull request 5799
#5862 opened Jan 21, 2026 by Copilot AI • Draft
7 tasks
1
@anna-parker
2
feat(backend, website): download of original data for revisions backend related to the loculus backend component preview Triggers a deployment to argocd website Tasks related to the web application
#5856 opened Jan 19, 2026 by chaoran-chen Loading…
3 tasks done
1
15
feat(website): Add segment presence filter for multi-segmented organisms
#5841 opened Jan 15, 2026 by Copilot AI • Draft
12 tasks done
1
@anna-parker
1
feat(website): Cumulative graph of submission on groups page preview Triggers a deployment to argocd website Tasks related to the web application
#5839 opened Jan 15, 2026 by theosanderson Loading…
8
wip preview Triggers a deployment to argocd
#5831 opened Jan 12, 2026 by theosanderson • Draft
3 tasks
chore(kubernetes): update to SILO 0.9 and LAPIS 0.6 preview Triggers a deployment to argocd
#5814 opened Jan 8, 2026 by fengelniederhammer Loading…
3 tasks done
2
@fengelniederhammer
3
chore(deps): bump the minor group across 1 directory with 4 updates dependencies Pull requests that update a dependency file java Pull requests that update Java code
#5812 opened Jan 7, 2026 by dependabot bot Loading…
chore(deps): bump dtolnay/rust-toolchain from 1.92 to 1.100 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#5808 opened Jan 7, 2026 by dependabot bot Loading…
Helm output update_helm_output
#5807 opened Jan 7, 2026 by theosanderson • Draft
3 tasks
1
feat!(config, website): flip config and website to segment-reference structure config Configuration related issues, i.e. helm processing preview Triggers a deployment to argocd website Tasks related to the web application
#5799 opened Jan 5, 2026 by anna-parker Loading…
2 of 4 tasks
1
73
test(website): Add vitest unit tests for sequence details modal
#5789 opened Jan 3, 2026 by Copilot AI • Draft
3 tasks done
2
@corneliusroemer
chore: add GitHub Copilot instructions
#5787 opened Jan 3, 2026 by Copilot AI • Draft
3 tasks done
1
@corneliusroemer
feat(integration-tests): optimize integration tests by using bulk submission
#5785 opened Jan 3, 2026 by Copilot AI • Draft
2 of 3 tasks
1
@corneliusroemer
Make silo replicas configurable and add PDBs for HA
#5774 opened Dec 26, 2025 by google-labs-jules bot • Draft
1
fix(deployment): Use SHA256 digests and mirror all external images to GHCR update_db_schema
#5772 opened Dec 19, 2025 by Copilot AI • Draft
3 tasks done
1
@corneliusroemer
15
feat(deposition): use zstd download and orjsonl for released entries
#5768 opened Dec 19, 2025 by google-labs-jules bot • Draft
7
feat(backend, deposition): add a deposition status to the backend and use to filter get-released-data prior to streaming update_db_schema
#5767 opened Dec 19, 2025 by anna-parker Loading…
3 tasks done
7
ProTip! What’s not been updated in a month: updated:<2025-12-27.