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ModelSEED model parsing and early PyPI package logic#4

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freiburgermsu wants to merge 6 commits intomaranasgroup:masterfrom
freiburgermsu:master
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ModelSEED model parsing and early PyPI package logic#4
freiburgermsu wants to merge 6 commits intomaranasgroup:masterfrom
freiburgermsu:master

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freiburgermsu and others added 6 commits June 23, 2023 15:27
Rewrote dG_prediction_modelseed_dev_branch_file_run.py to pre-compute
signature matrices and batch model predictions, reducing runtime from
~15 days to ~2 minutes. Removed model pkl, pycache, and DS_Store from
git tracking via .gitignore.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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