Search results

Interpretation of cohen_h_l and cohen_h_h for negative Cohen's h values in modkit dmr

Status: Open.

#629 In nanoporetech/modkit;

· vanditha996-lgtm opened on May 29, 2026

Modkit pile up Inconsistent biological results for RNA m5c

Status: Open.

#628 In nanoporetech/modkit;

· marcellogiunta opened on May 29, 2026

Sample swap in modkit dmr compare-tx-sites

bugSomething isn't workingSomething isn't working

build-availablecustom build produced for fix.custom build produced for fix.

Status: Open.

#627 In nanoporetech/modkit;

· Kilian-Winiger opened on May 29, 2026

Feature Request: Inner-join for modkit bedmethyl merge

Status: Open.

#625 In nanoporetech/modkit;

· SuhasSrinivasan opened on May 29, 2026

modkit dmr compare-tx-sites works only when GTF files have gene and transcript version numbers

bugSomething isn't workingSomething isn't working

build-availablecustom build produced for fix.custom build produced for fix.

Status: Open.

#624 In nanoporetech/modkit;

· Kilian-Winiger opened on May 28, 2026

pileUp and dmr showing significant results for m6A even with very low amount of mapped reads from Dorado's modBAM

questionLooking for clarification on inputs and/or outputsLooking for clarification on inputs and/or outputs

Status: Open.

#618 In nanoporetech/modkit;

· eltonjrv opened on May 8, 2026

Cutoff Threshold Sensitivity in Human Samples

questionLooking for clarification on inputs and/or outputsLooking for clarification on inputs and/or outputs

Status: Open.

#616 In nanoporetech/modkit;

· JRenGit opened on May 6, 2026

V0.6.1 does not work on pacbio samples, while v0.5.0 worked fine (no problems with ONT)

troubleshootingworkflow and data preparation questionsworkflow and data preparation questions

Status: Open.

#612 In nanoporetech/modkit;

· AmberVerhasselt opened on Apr 22, 2026

estimated pass threshold with default settings very high (v0.5.0 and v.0.6.1)

troubleshootingworkflow and data preparation questionsworkflow and data preparation questions

Status: Open.

#611 In nanoporetech/modkit;

· AmberVerhasselt opened on Apr 15, 2026

pileup CLI parse failure

troubleshootingworkflow and data preparation questionsworkflow and data preparation questions

Status: Open.

#609 In nanoporetech/modkit;

· aadali opened on Apr 10, 2026

Modkit pileup - segmentation fault and performance issues in high-coverage regions

troubleshootingworkflow and data preparation questionsworkflow and data preparation questions

Status: Open.

#607 In nanoporetech/modkit;

· mfurla opened on Apr 7, 2026

Discrepancy in calls when running individual modified base pileup and combined modbase pileup

troubleshootingworkflow and data preparation questionsworkflow and data preparation questions

Status: Open.

#606 In nanoporetech/modkit;

· gsukrit opened on Apr 7, 2026