Docker container for XCMS and tandem MS data analysiss

Based on the Rocker-Project.org Docker RStudio verse container for CyVerse Discovery Environment (DE) data science workbench.

Instructions

1 - Pull the container from DockerHub

docker pull nathaliagg/rstudio-xcms:latest

2 - Run on Atmosphere VM or locally

docker run -it --rm -v /$HOME:/app --workdir /app -p 8787:80 -e REDIRECT_URL=http://<IP_ADDRESS_ATMO_VM>:8787 nathaliagg/rstudio-xcms:latest

The default username is rstudio and password is rstudio1. To reset the password, add the flag -e PASSWORD=<yourpassword> in the docker run statement.