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New England Biolabs Inc.

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  1. plate-map plate-map Public

    A flexible tool for defining the contents of 96 well plates.

    JavaScript 50 14

  2. EM-seq EM-seq Public

    Tools and Data related to Enzymatic Methylation Sequencing

    Nextflow 29 8

  3. domainator domainator Public

    A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.

    Python 28 2

  4. ampseer ampseer Public

    Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing library they are read from. It is intended to differentiate betwe…

    Rust 15 1

  5. VarSkip VarSkip Public

    VarSkip multiplex PCR designs for SARS-CoV-2 sequencing

    14 9

  6. methylation_tools methylation_tools Public

    A few tools for manipulating methylation call files

    Python 5

Repositories

Showing 10 of 59 repositories
  • tasmanian-mismatch Public

    Analysis of artifacts in high throughput sequencing data from genomic DNA.

    nebiolabs/tasmanian-mismatch’s past year of commit activity
    HTML 0 1 9 2 Updated Jan 9, 2026
  • domainator Public

    A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.

    nebiolabs/domainator’s past year of commit activity
    Python 28 2 17 0 Updated Jan 2, 2026
  • EM-seq Public

    Tools and Data related to Enzymatic Methylation Sequencing

    nebiolabs/EM-seq’s past year of commit activity
    Nextflow 29 AGPL-3.0 8 11 1 Updated Dec 20, 2025
  • bamslice Public

    efficiently slices a bam file into chunks of interleaved fastq for efficient downstream processing

    nebiolabs/bamslice’s past year of commit activity
    Rust 2 AGPL-3.0 0 2 0 Updated Nov 28, 2025
  • rsvAB-sequencing Public

    NEBNext RSV A/B Multiplex PCR sequencing primers

    nebiolabs/rsvAB-sequencing’s past year of commit activity
    1 AGPL-3.0 1 0 0 Updated Nov 25, 2025
  • low_bismap_methyl_calls Public

    Tools to assess called methylation in low mappability regions (as defined by bismap). Aligner MapQ does not always align with low mappability

    nebiolabs/low_bismap_methyl_calls’s past year of commit activity
    TeX 0 AGPL-3.0 0 4 0 Updated Nov 6, 2025
  • NEBNextFluA Public

    Details and analysis recommendations for use with the NEBNext Flu A Integrated Indexing Primer Module (NEB #E3436S)

    nebiolabs/NEBNextFluA’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Oct 23, 2025
  • dna-polymerase-fidelity Public

    Computational pipeline to measure DNA polymerase fidelity (second strand DNA synthesis)

    nebiolabs/dna-polymerase-fidelity’s past year of commit activity
    Perl 0 AGPL-3.0 0 0 0 Updated Oct 17, 2025
  • nebiolabs/EM-seq_variant_calling’s past year of commit activity
    Nextflow 0 AGPL-3.0 0 0 0 Updated Oct 16, 2025
  • fatools Public Forked from trmznt/fatools

    A Python library for performing DNA fragment-analysis

    nebiolabs/fatools’s past year of commit activity
    Python 0 LGPL-3.0 12 1 0 Updated Aug 5, 2025

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