Nextstrain build for measles virus

Nextstrain shared infrastructure

Pipeline components for real-time phylodynamic analysis

Scripts. config, and snakefiles for seasonal-flu nextstrain builds

Nextstrain build for avian influenza viruses

Docker image build for nextstrain/base

The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.

The Nextstrain website

A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.