Add test data for nf-core/denovoproteomics#1985
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BioGeek wants to merge 3 commits intonf-core:masterfrom
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Add test data for nf-core/denovoproteomics#1985BioGeek wants to merge 3 commits intonf-core:masterfrom
BioGeek wants to merge 3 commits intonf-core:masterfrom
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Two small DDA mzML files (48 spectra each, 4.9 MB) from a Thermo LTQ FT instrument. Includes samplesheets for standard and mapping modes. Mapping mode references yeast_UPS_mini.fasta cross-branch from the modules branch. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Once nf-core#1985 is merged, update URLs back to nf-core/test-datasets. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Use OVEMB150205_12.raw and OVEMB150205_14.raw from the modules branch (data/proteomics/msspectra/) to avoid duplicating test data. Remove custom mzML files that were copies of local pipeline data. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
mashehu
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Apr 13, 2026
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this file should stay please 🙂
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Summary
Add test data for the nf-core/denovoproteomics pipeline — a database-free end-to-end proteomics pipeline using deep learning de novo peptide sequencing.
Files added
samplesheet.csvsamplesheet_mapping.csvtestdata/sample1.mzMLtestdata/sample2.mzMLREADME.mdCross-branch references
The pipeline also references existing data from the
modulesbranch for mapping mode tests:data/proteomics/database/yeast_UPS_mini.fasta(4.2 KB, 10 proteins)Total branch size
~10 MB (2 mzML files + samplesheets + README).
Note
This PR should be merged as a new branch (
denovoproteomics), not intomaster, following the nf-core/test-datasets convention.🤖 Generated with Claude Code