Add test data for nf-core/rnastructurome#1990
Open
Vicbeg wants to merge 1 commit intonf-core:rnastructuromefrom
Open
Add test data for nf-core/rnastructurome#1990Vicbeg wants to merge 1 commit intonf-core:rnastructuromefrom
Vicbeg wants to merge 1 commit intonf-core:rnastructuromefrom
Conversation
mashehu
reviewed
Apr 14, 2026
Contributor
There was a problem hiding this comment.
this is way to big. we are trying to keep the data as small as possible (at least 1MB). can you subset these fastq files further?
Author
There was a problem hiding this comment.
I have further subsetted the fastq files to the smallest they can be and still go through the whole pipeline.
Contributor
There was a problem hiding this comment.
awesome, thanks! could you please drop the previous commit, to avoid having the large file in the git history.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Add a small subset test dataset for the nf-core/rnastructurome pipeline.
The test data consists of:
A samplesheet (
samplesheet_SHAPE_RT-stop.csv) is also included, which describes the samples and is required as input by the pipeline.