Add test samplesheets for samplesheetparser modules

[chaitanyakasaraneni]

Adds two minimal Illumina SampleSheet.csv fixtures under data/generic/csv/samplesheets/ to back seven new samplesheetparser/* modules being contributed to nf-core/modules (companion PRs to follow).

Files added

• samplesheet.v1.csv — IEM V1 (bcl2fastq) format, dual-index, 5 samples across 2 projects and 2 lanes (957 B)
• samplesheet.v2.csv — BCLConvert V2 format, dual-index, 5 samples across 2 projects and 2 lanes (670 B)
• README.md has been updated to list them under the generic/csv section.

[maxulysse]

That looks interesting.
where are these samplesheetparser modules?

[matthdsm]

Is there any way you could use or amend the existing samplesheet in the test data repo? -> genomics/homo_sapiens/illumina/bcl/flowcell_samplesheet.csv

Perhaps add a V1 and V2 version of that one (and make sure not to break any modules tests in the process)

[chaitanyakasaraneni]

That looks interesting. where are these samplesheetparser modules?

Hey @maxulysse! Thanks for the interest! The samplesheetparser/* modules are still in local testing. I'll open the PRs against nf-core/modules once this test-datasets PR lands.

In the meantime, if you'd like to try the underlying tool:

• pip: pip install samplesheet-parser
• bioconda: conda install -c bioconda samplesheet-parser
• Source + docs: https://github.com/chaitanyakasaraneni/samplesheet-parser

[chaitanyakasaraneni]

Is there any way you could use or amend the existing samplesheet in the test data repo? -> genomics/homo_sapiens/illumina/bcl/flowcell_samplesheet.csv

Perhaps add a V1 and V2 version of that one (and make sure not to break any modules tests in the process)

Hey @matthdsm! Thanks for the suggestion! I moved the fixtures into data/genomics/homo_sapiens/illumina/bcl/ as siblings to the existing flowcell_samplesheet.csv (named flowcell_samplesheet.v1.csv and flowcell_samplesheet.v2.csv). The existing file and its consumers (bcl2fastq, bclconvert, bcl_demultiplex) remain untouched. Updated the README next to the existing entry and pushed the amended commit.