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* add in optional ggplot args * adjust process data so grouping is correctly adjusted based on model condition and grouping * change default model as 1 from NA * set plot to look for only recruitment and not rec exp or obs * allow users to access ggplot geom args * fix maggritr in pipe
* initial commit of new obs v pred plot * adjust process data so it converts all indexed data to character to function even when input values are numeric per #212 * update plot indices to use new plot_obsvpred function and adjust based on needs * update documentation for package * adjust plot_indices where nfleet = 1 and update test to remove new file produced * add missing dependency
… from SS3 (#222) * adjust reference line to take our era and use plot data instead * adjust reference label to replace underscore with space * update ref line documentation * fix commit from overwrite when rebasing * fixes to plot including adjusting missing legend * add back in ggplot options * adjust plot ts to stop error from color label * adjust conditions where legend is remove
…anges (#229) * Initial plan * Add GitHub Action to update example_data when convert_output.R changes Agent-Logs-Url: https://github.com/nmfs-ost/stockplotr/sessions/16147f90-2416-4af0-a517-a1d297703e33 Co-authored-by: Schiano-NOAA <125507018+Schiano-NOAA@users.noreply.github.com> --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: Schiano-NOAA <125507018+Schiano-NOAA@users.noreply.github.com>
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Code coverage of files in pull request scope (76.9%)
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Variety of bug fixes that were identified during the workshop or by FIMS devs