Repositories list

• biojava

  Public

  biojava/biojava’s past year of commit activity
  :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

  javabioinformaticsgenomics+ 9

  javabioinformaticsgenomicspdbparser-libraryprotein-data-bankprotein-structureprotein-sequencessequence-alignmentprotein-modification+ 2

  Java

  •

  GNU Lesser General Public License v2.1

  •395395 forks•623623 stars•6767 issues•22 pull requests•Updated Dec 19, 2025Dec 19, 2025

• biojava-spark

  Public
  :collision: Algorithms that are built around BioJava and run on Apache Spark

  Java

  •

  GNU Lesser General Public License v2.1

  •33 forks•88 stars•00 issues•11 pull request•Updated Dec 19, 2025Dec 19, 2025

• biojava-http

  Public
  HTML/JS based user interfaces for BioJava

  Java

  •66 forks•44 stars•00 issues•22 pull requests•Updated Dec 19, 2025Dec 19, 2025

• biojava-legacy

  Public
  Legacy BioJava 1 Code

  Java

  •1616 forks•55 stars•44 issues•11 pull request•Updated Nov 7, 2025Nov 7, 2025

• biojava.github.io

  Public
  The code for the new BioJava homepage.

  SCSS

  •

  Other

  •1616 forks•44 stars•66 issues•77 pull requests•Updated Jan 9, 2025Jan 9, 2025

• biojava-tutorial

  Public
  :book::books:An introductory tutorial for BioJava

  javabioinformaticstutorial+ 5

  javabioinformaticstutorialgenomicsprotein-structurebiojava3d-structureprotein-disorder

  Python

  •

  Other

  •4242 forks•122122 stars•44 issues•00 pull requests•Updated Feb 23, 2024Feb 23, 2024

• rcsb-sequenceviewer

  Public archive
  PDB Amino Acid Sequence Viewer

  Java

  •44 forks•66 stars•22 issues•11 pull request•Updated Feb 8, 2024Feb 8, 2024

• rcsb-viewers

  Public archive
  Biojava based RCSB Viewers

  Java

  •1010 forks•33 stars•22 issues•44 pull requests•Updated Feb 8, 2024Feb 8, 2024

• biojava-adam

  Public
  Biojava and ADAM integration.

  Java

  •

  GNU Lesser General Public License v3.0

  •22 forks•22 stars•33 issues•11 pull request•Updated Apr 21, 2023Apr 21, 2023

• logo

  Public
  A repository to host the competition for a new BioJava logo

  Other

  •55 forks•55 stars•00 issues•00 pull requests•Updated Mar 12, 2018Mar 12, 2018

• biojava-cookbook

  Public
  Collection of quick 'recipes' for common BioJava tasks

  00 forks•11 star•22 issues•00 pull requests•Updated Jan 11, 2017Jan 11, 2017

• maven-repo

  Public
  A BioJava specific maven repository, mostly for legacy releases, since all new releases are on Maven Central

  GNU Lesser General Public License v2.1

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 21, 2016Apr 21, 2016