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Update mapping*.csv files to make them valid #498

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98 changes: 50 additions & 48 deletions mappings/mapping_HI.csv
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Original file line number Diff line number Diff line change
@@ -1,49 +1,51 @@
# curie_map:,,,,,,,,,
# panet: http://purl.org/pan-science/PaNET/,,,,,,,,,
# rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#,,,,,,,,,
# rdfs: http://www.w3.org/2000/01/rdf-schema#,,,,,,,,,
# skos: http://www.w3.org/2004/02/skos/core#,,,,,,,,,
# sssom: https://w3id.org/sssom/,,,,,,,,,
# hi: https://connect.helmholtz-imaging.de/application/,,,,,,,,,
# orcid: https://orcid.org/,,,,,,,,,
# semapv: https://w3id.org/semapv/vocab/,,,,,,,,,
# license: https://creativecommons.org/licenses/by/4.0/,,,,,,,,,
# mapping_set_description: Manually curated alignment of the PaNET ontology with the Helmholtz Imaging Vocabulary.,,,,,,,,,
# Intended to be used for ontological analysis.,,,,,,,,,
# mapping_set_id: mapping_IUCr_PaNET_v1.0.0,,,,,,,,,
# mapping_set_version: '2025-11-18',,,,,,,,,
# object_source: https://helmholtz-imaging.de/,,,,,,,,,
# subject_source: https://pan-ontologies.github.io/PaNET/latest/index-en.html,,,,,,,,,
# ,,,,,,,,,
# curie_map:
# panet: https://w3id.org/PaN/PaNET/1.3.0/PaNET#
# panetsource: https://w3id.org/PaN/PaNET/1.3.0/
# rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#
# rdfs: http://www.w3.org/2000/01/rdf-schema#
# skos: http://www.w3.org/2004/02/skos/core#
# sssom: https://w3id.org/sssom/
# hi: https://connect.helmholtz-imaging.de/application/
# hisource: https://helmholtz-imaging.de
# orcid: https://orcid.org/
# semapv: https://w3id.org/semapv/vocab/
# license: https://creativecommons.org/licenses/by/4.0/
# mapping_set_description: Manually curated alignment of the PaNET ontology with the Helmholtz Imaging Vocabulary.
# Intended to be used for ontological analysis.
# mapping_set_id: https://github.com/pan-ontologies/PaNET/blob/master/mappings/mapping_HI.csv
# mapping_set_version: '2025-11-18'
# object_source: hisource:/
# subject_source: panetsource:PaNET.owl
#
subject_id,subject_label,predicate_id,object_id,object_label,mapping_justification,author_id,object_source_version,mapping_date,confidence
panet:PaNET01129,tomography,skos:narrowMatch,3D slicing tomography,hi:99,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01323,radiotherapy,skos:narrowMatch,Adaptive radiotherapy,Hi:172,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01129,tomography,skos:narrowMatch,Bio-medical tomography,Hi:65,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET00410,medical application,skos:narrowMatch,Bio-medical tomography,Hi:65,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,Cancer imaging,Hi:29,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET00410,medical application,skos:narrowMatch,Cancer imaging,Hi:29,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,Cardiac imaging,Hi:32,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET00410,medical application,skos:narrowMatch,Cardiac imaging,Hi:32,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01174,coherent diffraction imaging,skos:closeMatch,Coherent X-ray Scattering and Imaging,Hi:103,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,Drug imaging,Hi:173,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET00410,medical application,skos:narrowMatch,Drug imaging,Hi:173,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01069,microscopy,skos:narrowMatch,EUV microscopy,Hi:201,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET2020008,EUV photon,skos:narrowMatch,EUV microscopy,Hi:201,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,Functional Imaging,Hi:49,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01206,microtomography,skos:narrowMatch,High-throughput microtomography,Hi:192,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNETPaNET01211,ultrafast microtomography,skos:closeMatch,High-throughput microtomography,Hi:192,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,0.9
panet:PaNET01129,tomography,skos:narrowMatch,In situ tomography,Hi:24,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01129,tomography,skos:narrowMatch,In vivo tomography,Hi:25,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,Morphological imaging,Hi:71,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,Multi-parameter physiological imaging,hi:70,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,Neuroimaging,hi:30,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET00410,medical application,skos:narrowMatch,Neuroimaging,hi:30,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,Pelagic imaging,hi:138,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,Perinatal imaging,hi:31,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,Photogrammetry,hi:153,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,Quantitative MRI,hi:196,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,Shadowgraphy,hi:120,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01164,macromolecular crystallography,skos:relatedMatch,Structural Biology,hi:33,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01312,time resolved serial synchrotron crystallography,skos:relatedMatch,Time Resolved Microcrystallography,hi:104,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNETPaNET01032,micro scale diffraction,skos:relatedMatch,Time Resolved Microcrystallography,hi:104,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,Tissue imaging,hi:177,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01129,tomography,skos:narrowMatch,hi:99,3D slicing tomography,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01323,radiotherapy,skos:narrowMatch,hi:172,Adaptive radiotherapy,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01129,tomography,skos:narrowMatch,hi:65,Bio-medical tomography,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET00410,medical application,skos:narrowMatch,hi:65,Bio-medical tomography,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,hi:29,Cancer imaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET00410,medical application,skos:narrowMatch,hi:29,Cancer imaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,hi:32,Cardiac imaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET00410,medical application,skos:narrowMatch,hi:32,Cardiac imaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01174,coherent diffraction imaging,skos:closeMatch,hi:103,Coherent X-ray Scattering and Imaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,hi:173,Drug imaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET00410,medical application,skos:narrowMatch,hi:173,Drug imaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01069,microscopy,skos:narrowMatch,hi:201,EUV microscopy,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET2020008,EUV photon,skos:narrowMatch,hi:201,EUV microscopy,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,hi:49,Functional Imaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01206,microtomography,skos:narrowMatch,hi:192,High-throughput microtomography,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNETPaNET01211,ultrafast microtomography,skos:closeMatch,hi:192,High-throughput microtomography,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,0.9
panet:PaNET01129,tomography,skos:narrowMatch,hi:24,In situ tomography,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01129,tomography,skos:narrowMatch,hi:25,In vivo tomography,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,hi:71,Morphological imaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,hi:70,Multi-parameter physiological imaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,hi:30,Neuroimaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET00410,medical application,skos:narrowMatch,hi:30,Neuroimaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,hi:138,Pelagic imaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,hi:31,Perinatal imaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,hi:153,Photogrammetry,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,hi:196,Quantitative MRI,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,hi:120,Shadowgraphy,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01164,macromolecular crystallography,skos:relatedMatch,hi:33,Structural Biology,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01312,time resolved serial synchrotron crystallography,skos:relatedMatch,hi:104,Time Resolved Microcrystallography,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNETPaNET01032,micro scale diffraction,skos:relatedMatch,hi:104,Time Resolved Microcrystallography,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
panet:PaNET01106,imaging,skos:narrowMatch,hi:177,Tissue imaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-11-06,1
54 changes: 28 additions & 26 deletions mappings/mapping_IUCr.csv
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Original file line number Diff line number Diff line change
@@ -1,27 +1,29 @@
# curie_map:,,,,,,,,,
# panet: http://purl.org/pan-science/PaNET/,,,,,,,,,
# rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#,,,,,,,,,
# rdfs: http://www.w3.org/2000/01/rdf-schema#,,,,,,,,,
# skos: http://www.w3.org/2004/02/skos/core#,,,,,,,,,
# sssom: https://w3id.org/sssom/,,,,,,,,,
# iucr: https://chem.libretexts.org/Bookshelves/Inorganic_Chemistry/Online_Dictionary_of_Crystallography_(IUCr_Commission)/,,,,,,,,,
# orcid: https://orcid.org/,,,,,,,,,
# semapv: https://w3id.org/semapv/vocab/,,,,,,,,,
# license: https://creativecommons.org/licenses/by/4.0/,,,,,,,,,
# mapping_set_description: Manually curated alignment of the PaNET ontology with the IUCr dictionary.,,,,,,,,,
# Intended to be used for ontological analysis.,,,,,,,,,
# mapping_set_id: mapping_IUCr_PaNET_v1.0.0,,,,,,,,,
# mapping_set_version: '2025-11-18',,,,,,,,,
# object_source: https://dictionary.iucr.org/Main_Page,,,,,,,,,
# subject_source: https://pan-ontologies.github.io/PaNET/latest/index-en.html,,,,,,,,,
# ,,,,,,,,,
# curie_map:
# panet: https://w3id.org/PaN/PaNET/1.3.0/PaNET#
# panetsource: https://w3id.org/PaN/PaNET/1.3.0/
# rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#
# rdfs: http://www.w3.org/2000/01/rdf-schema#
# skos: http://www.w3.org/2004/02/skos/core#
# sssom: https://w3id.org/sssom/
# iucr: https://chem.libretexts.org/Bookshelves/Inorganic_Chemistry/Online_Dictionary_of_Crystallography_(IUCr_Commission)/
# iucrsource: https://dictionary.iucr.org/
# orcid: https://orcid.org/
# semapv: https://w3id.org/semapv/vocab/
# license: https://creativecommons.org/licenses/by/4.0/
# mapping_set_description: Manually curated alignment of the PaNET ontology with the IUCr dictionary.
# Intended to be used for ontological analysis.
# mapping_set_id: https://github.com/pan-ontologies/PaNET/blob/master/mappings/mapping_IUCr.csv
# mapping_set_version: '2025-11-18'
# object_source: iucrsource:Main_Page
# subject_source: panetsource:PaNET.owl
#
subject_id,subject_label,predicate_id,object_id,object_label,mapping_justification,author_id,object_source_version,mapping_date,confidence
Panet:PaNET01049,resonant scattering,skos:narrowMatch,anomalous absorption,iucr:03:_X-rays/3.02:_Anomalous_absorption,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
Panet:PaNET2012002,absorption,skos:narrowMatch,anomalous absorption,iucr:03:_X-rays/3.02:_Anomalous_absorption,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
Panet:PaNET01049,resonant scattering,skos:exactMatch,anomalous scattering,iucr:03:_X-rays/3.04:_Anomalous_scattering,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
panet:PaNET01325,borrmann effect,skos:exactMatch,Borrmann effect,iucr:03:_X-rays/3.05:_Borrmann_Effect,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
Panet:PaNET01049,resonant scattering,skos:exactMatch,resonant scattering,iucr:03:_X-rays/3.24:_Resonant_scattering,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
panet:PaNET01030,powder diffraction,skos:exactMatch,powder diffraction,iucr:08:_Powder_Diffraction,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
panet:PaNET2020009,X-ray,skos:exactMatch,X-rays,iucr:03:_X-rays,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
panet:PaNET01164,macromolecular crystallography,skos:closeMatch,Biological Crystallography,iucr:10:_Biological_Crystallography,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
panet:PaNET01165,multi wavelength anomalous diffraction,skos:exactMatch,Multiwavelength anomalous diffraction (MAD),iucr:/10:_Biological_Crystallography/10.05:_Multiwavelength_anomalous_diffraction_(MAD),semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
panet:PaNET01049,resonant scattering,skos:narrowMatch,iucr:03:_X-rays/3.02:_Anomalous_absorption,anomalous absorption,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
panet:PaNET2012002,absorption,skos:narrowMatch,iucr:03:_X-rays/3.02:_Anomalous_absorption,anomalous absorption,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
panet:PaNET01049,resonant scattering,skos:exactMatch,iucr:03:_X-rays/3.04:_Anomalous_scattering,anomalous scattering,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
panet:PaNET01325,borrmann effect,skos:exactMatch,iucr:03:_X-rays/3.05:_Borrmann_Effect,Borrmann effect,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
panet:PaNET01049,resonant scattering,skos:exactMatch,iucr:03:_X-rays/3.24:_Resonant_scattering,resonant scattering,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
panet:PaNET01030,powder diffraction,skos:exactMatch,iucr:08:_Powder_Diffraction,powder diffraction,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
panet:PaNET2020009,X-ray,skos:exactMatch,iucr:03:_X-rays,X-rays,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
panet:PaNET01164,macromolecular crystallography,skos:closeMatch,iucr:10:_Biological_Crystallography,Biological Crystallography,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
panet:PaNET01165,multi wavelength anomalous diffraction,skos:exactMatch,iucr:10:_Biological_Crystallography/10.05:_Multiwavelength_anomalous_diffraction_(MAD),Multiwavelength anomalous diffraction (MAD),semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,,2025-10-28,1
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