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issues with BD Rhapsody TCR data

Status: Open.

#74 In phbradley/conga;

· BDXH-FY24 opened on Apr 28, 2026

# Perform dimensionality reduction and clustering of GEX and TCR data. # UMAP reduction and louvain clustering are the defaults. adata = conga.preprocess.cluster_and_tsne_and_umap(adata) print('adata.shape:', adata.shape) print('adata.obs_keys():', adata.obs_keys()) print('adata.obsm_keys():', adata.obsm_keys())

Status: Open.

#72 In phbradley/conga;

· szy23333 opened on Sep 19, 2024

using CONGA on multiplexed data?

Status: Open.

#69 In phbradley/conga;

· jjs847 opened on May 11, 2024

deal with TRDV1_TRAJ_TRAC sequences

Status: Open.

#68 In phbradley/conga;

· guillemsanchezsanchez1996 opened on Mar 24, 2024

Only CDR3 Region?

Status: Open.

#67 In phbradley/conga;

· TheRaspberryFox opened on Mar 12, 2024

Question about the _compute_graph_overlap_stats() function

Status: Open.

#66 In phbradley/conga;

· xiachenrui opened on Feb 21, 2024

Question about --nbr_fracs

Status: Open.

#64 In phbradley/conga;

· anchormok opened on Sep 25, 2023

Issue with logo plots

Status: Open.

#62 In phbradley/conga;

· guillemsanchezsanchez1996 opened on May 30, 2023

running Conga on integrated Seurat Gex

Status: Open.

#61 In phbradley/conga;

· SamWell16 opened on May 19, 2023

pMHC data processing

Status: Open.

#60 In phbradley/conga;

· leeanapeters opened on Apr 13, 2023

Mouse BCR

Status: Open.

#58 In phbradley/conga;

· DennisCambridge opened on Jan 11, 2023

What does spurious chain sharing mean?

Status: Open.

#56 In phbradley/conga;

· chuckzzzz opened on Nov 22, 2022