psa-lab · KoyanoBunsho · Nov 13, 2021 · Dec 18, 2021 · Dec 18, 2021 · Jan 2, 2022
diff --git a/proflex/prog/first/src/c++/fixbabel.cpp b/proflex/prog/first/src/c++/fixbabel.cpp
diff --git a/proflex/prog/first/src/c++/hydrophobic.cpp b/proflex/prog/first/src/c++/hydrophobic.cpp
diff --git a/proflex/prog/first/src/c++/main.cpp b/proflex/prog/first/src/c++/main.cpp
diff --git a/proflex/prog/first/src/c++/makechem.cpp b/proflex/prog/first/src/c++/makechem.cpp
diff --git a/proflex/prog/first/src/c++/pick_hbonds.cpp b/proflex/prog/first/src/c++/pick_hbonds.cpp
diff --git a/proflex/prog/first/src/c++/transitions.cpp b/proflex/prog/first/src/c++/transitions.cpp
diff --git a/proflex/prog/hbdilute/include/connect.h b/proflex/prog/hbdilute/include/connect.h
@@ -1,3 +1,4 @@
+
 /*******************************************************************************
 *  MSU ProFlex, formerly called FIRST, is a software developed to predict and  *
 *  analyze protein flexibility.                                                *
@@ -22,9 +23,9 @@
 
 #ifndef _CONNECT_
 #define _CONNECT_
-
 #include "types.h"
+#include <stdio.h>
 
-void print_connections( FILE *, FILE *, int[] );
+void print_connections(FILE *, FILE *, int[]);
 
 #endif
diff --git a/proflex/prog/hbdilute/include/graphs.h b/proflex/prog/hbdilute/include/graphs.h
@@ -24,7 +24,7 @@
 #define _GRAPHS_
 
 #include "types.h"
-
-void plot_data( FILE *, float[], float[], float[], float[], int );
+#include <stdio.h>
+void plot_data(FILE *, float[], float[], float[], float[], int);
 
 #endif
diff --git a/proflex/prog/hbdilute/include/hbfunctions.h b/proflex/prog/hbdilute/include/hbfunctions.h
@@ -24,6 +24,7 @@
 #define _HDFUNCTIONS_
 
 #include "types.h"
+#include <stdio.h>
 
 void read_chem_file( atom_list **, FILE *, int[], int[], char[], int *, 
 		     int *, int[], int[], char[],
@@ -38,5 +39,3 @@ void clean_up( FILE *, int);
 int open_output_file( char [], FILE**  );
 
 #endif
-
-
diff --git a/proflex/prog/hbdilute/include/postscript.h b/proflex/prog/hbdilute/include/postscript.h
@@ -24,6 +24,7 @@
 #define _POSTSCRIPT_
 
 #include "types.h"
+#include <stdio.h>
 
 void print_header( FILE *, float );
 void print_data_headings( FILE *, int, int, int, int[]  );

diff --git a/proflex/prog/hbdilute/include/text_output.h b/proflex/prog/hbdilute/include/text_output.h
@@ -20,19 +20,19 @@
 *  or see http://www.gnu.org/licenses/gpl.txt                                  *
 *******************************************************************************/
 
-/* 
+/*
  * File:   text_output.h
  * Author: Sameer Arora
  *
  * Created on November 10, 2003, 5:23 PM
  */
 
 #ifndef _text_output_H
-#define	_text_output_H
+#define _text_output_H
 
 #include "types.h"
+#include <stdio.h>
 
 void print_text_decomp( clusters *[], int, int, FILE *, int [], int, int,float,float); 
 
 #endif	/* _text_output_H */
-
diff --git a/proflex/prog/hbdilute/src/hbfunctions.c b/proflex/prog/hbdilute/src/hbfunctions.c
@@ -920,4 +920,3 @@ void clean_up( FILE *ps_file, int number_of_pages ){
       return(1); 
 
   }
-
diff --git a/proflex/prog/hbdilute/src/postscript.c b/proflex/prog/hbdilute/src/postscript.c
@@ -31,6 +31,7 @@
 #include <math.h>
 #include <stdlib.h>
 #include <time.h>
+#include <string.h>
 #include "../include/types.h"
 
 #define TRUE  1

diff --git a/proflex/prog/hbdilute/src/text_output.c b/proflex/prog/hbdilute/src/text_output.c
@@ -44,6 +44,29 @@
 /* Outout is written to a text file instead of generating a postscript*/                
 /**********************************************************************/
 
+static void swap_colors(int array[MAX_CLUSTER_COUNT], int A, int B) {
+  int temp;
+  temp = array[A];
+  array[A] = array[B];
+  array[B] = temp;
+}
+
+static void quick_sort(int *array, int start, int end) {
+
+  int a = 0, last = 0;
+
+  if (start >= end)
+    return;
+  swap_colors(array, start, (start + end) / 2);
+  last = start;
+  for (a = start + 1; a <= end; a++) {
+    if (array[a] < array[start])
+      swap_colors(array, ++start, a);
+  }
+  swap_colors(array, start, last);
+  quick_sort(array, start, last - 1);
+  quick_sort(array, last + 1, end);
+}
 
 void print_text_decomp( 
                     clusters *nc_count[120], int cluster_counter, int line_number, 
@@ -129,4 +152,3 @@ static int
 }
 
 
-
Original file line number	Diff line number	Diff line change
Expand Up		@@ -920,4 +920,3 @@ void clean_up( FILE *ps_file, int number_of_pages ){
		return(1);

		}