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1. DNA-Foundation-Models DNA-Foundation-Models Public

   From Nucleotide Transformer embeddings to single-nucleotide genome annotation.

   Jupyter Notebook 1 1

2. kircherlab/HowToTrainDNN kircherlab/HowToTrainDNN Public

   Tutorial for IGVF-MPRA-Workshop-2024, Lübeck, Germany

3. kircherlab/MPRAsnakeflow kircherlab/MPRAsnakeflow Public

   With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is the standard MPRA pipeline of the IGVF consortium and a further development of MPRAflow.

   Python 16 13

4. visze/sequence_cnn_models visze/sequence_cnn_models Public

   Python 13 2