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Saalfeld Lab

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  1. n5 n5 Public

    Not HDF5

    Java 194 23

  2. paintera paintera Public

    Java 111 19

  3. render render Public

    Render transformed image tiles

    Java 35 33

  4. bigwarp bigwarp Public

    A tool for manual pointwise deformable registration using bigdataviewer.

    Java 34 14

  5. stitching-spark stitching-spark Public

    Reconstruct big images from overlapping tiled images on a Spark cluster.

    Java 34 10

  6. n5-viewer n5-viewer Public

    BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.

    Java 19 11

Repositories

Showing 10 of 111 repositories
  • NeuralGraph Public
    saalfeldlab/NeuralGraph’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 16, 2026
  • n5 Public

    Not HDF5

    saalfeldlab/n5’s past year of commit activity
    Java 194 BSD-2-Clause 23 25 7 Updated Jan 15, 2026
  • n5-zarr Public

    Zarr filesystem backend for N5

    saalfeldlab/n5-zarr’s past year of commit activity
    Java 17 BSD-2-Clause 17 12 5 Updated Jan 15, 2026
  • n5-universe Public

    Functionality shared across all n5

    saalfeldlab/n5-universe’s past year of commit activity
    Java 1 BSD-2-Clause 6 7 4 Updated Jan 15, 2026
  • n5-imglib2 Public
    saalfeldlab/n5-imglib2’s past year of commit activity
    Java 0 BSD-2-Clause 8 4 2 Updated Jan 15, 2026
  • hot-knife Public
    saalfeldlab/hot-knife’s past year of commit activity
    Java 4 GPL-2.0 8 1 3 Updated Jan 15, 2026
  • n5-aws-s3 Public

    N5 library implementation using Amazon Web Services S3 backend.

    saalfeldlab/n5-aws-s3’s past year of commit activity
    Java 5 BSD-2-Clause 7 3 1 Updated Jan 14, 2026
  • MPM_pytorch Public

    Develop a full PyTorch version of Taichi-MPM

    saalfeldlab/MPM_pytorch’s past year of commit activity
    Python 4 0 0 0 Updated Jan 12, 2026
  • render Public

    Render transformed image tiles

    saalfeldlab/render’s past year of commit activity
    Java 35 GPL-2.0 33 29 6 Updated Jan 9, 2026
  • paintera Public
    saalfeldlab/paintera’s past year of commit activity
    Java 111 GPL-2.0 19 72 (12 issues need help) 2 Updated Dec 23, 2025
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