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Feat: BWA job with samtools with view and unsorted and sort as separate job

enhancementNew feature or requestNew feature or request

Status: Open.

#19 In scholl-lab/sm-alignment;

· berntpopp opened on Jan 28, 2025

Feat: implement retry in pipeline

enhancementNew feature or requestNew feature or request

Status: Open.

#18 In scholl-lab/sm-alignment;

· berntpopp opened on Jan 28, 2025

Feature request: add qualimap scripts

enhancementNew feature or requestNew feature or request

Status: Open.

#17 In scholl-lab/sm-alignment;

· berntpopp opened on Jan 21, 2025

Feature request: Generate Metadata File Based on Input File Naming Schema

enhancementNew feature or requestNew feature or request

Status: Open.

#16 In scholl-lab/sm-alignment;

· berntpopp opened on Jul 4, 2024

Documentation: Add Guideline for Generating the Metadata File

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#15 In scholl-lab/sm-alignment;

· berntpopp opened on Jul 4, 2024

Feature request: Add Automated Testing for Workflow Steps with Test Input Files

enhancementNew feature or requestNew feature or request

Status: Open.

#14 In scholl-lab/sm-alignment;

· berntpopp opened on Jul 4, 2024

Documentation: Add Documentation for Reference Files

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#13 In scholl-lab/sm-alignment;

· berntpopp opened on Jul 4, 2024

Documentation: Add Documentation on Tool Installation

enhancementNew feature or requestNew feature or request

Status: Open.

#12 In scholl-lab/sm-alignment;

· berntpopp opened on Jul 4, 2024

Feature request: Remove Hardcoded Values and Move to Configs

enhancementNew feature or requestNew feature or request

Status: Open.

#11 In scholl-lab/sm-alignment;

· berntpopp opened on Jul 4, 2024

Documentation: Improve Documentation with Mermaid Diagrams for Pipeline

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#10 In scholl-lab/sm-alignment;

· berntpopp opened on Jul 4, 2024

Feature request: Make Log Folder Configurable

enhancementNew feature or requestNew feature or request

Status: Open.

#9 In scholl-lab/sm-alignment;

· berntpopp opened on Jul 4, 2024

Feature request: Make bqsr_bams.smk Output Paths Dynamic

enhancementNew feature or requestNew feature or request

Status: Open.

#8 In scholl-lab/sm-alignment;

· berntpopp opened on Jul 4, 2024