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pre-commit.ci mypy fails on dev (~556 pre-existing type errors) drags every PR check red

Status: Open.

#251 In scverse/gget;

· Elarwei001 opened on Jun 25, 2026

OpenTargets tests pin exact live values that drift across data releases (diseases/depmap/interactions/pharmacogenetics)

Status: Open.

#249 In scverse/gget;

· Elarwei001 opened on Jun 25, 2026

gget opentargets -r expression returns empty: OpenTargets retired target.expressions (data moved to baselineExpression)

Status: Open.

#247 In scverse/gget;

· Elarwei001 opened on Jun 25, 2026

CI on dev is failing (unrelated to incoming PRs): OpenTargets synonyms HTTP 400 + opentargets fixture drift + flaky archs4 — masks/blocks all PRs

Status: Open.

#243 In scverse/gget;

· Elarwei001 opened on Jun 24, 2026

Replace cellxgene-census

Status: Open.

#218 In scverse/gget;

· Zethson opened on Jun 12, 2026

Add typing & type checking

Status: Open.

#216 In scverse/gget;

· Zethson opened on Jun 11, 2026

gget virus: add function to only download new sequences

enhancementNew feature or requestNew feature or request

Status: Open.

#204 In scverse/gget;

· ferbsx opened on Feb 5, 2026

Support core_nt database in blast module

enhancementNew feature or requestNew feature or request

Status: Open.

#188 In scverse/gget;

· mikemc opened on Nov 20, 2025

gget seq ENST... gets genomic sequences (exons+introns) instead of transcript sequences

Status: Open.

#187 In scverse/gget;

· a-dna-n opened on Oct 16, 2025

gget ref assembly report

enhancementNew feature or requestNew feature or request

Status: Open.

#179 In scverse/gget;

· nh13 opened on May 16, 2025

Support download of PDBx/mmCIF format files in gget pdb (legacy PDB format will be phased out)

enhancementNew feature or requestNew feature or request

Status: Open.

#178 In scverse/gget;

· lauraluebbert opened on May 1, 2025

gget opentargets -r diseases

Status: Open.

#168 In scverse/gget;

· adeslatt opened on Nov 18, 2024