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[pre-commit.ci] pre-commit autoupdate #108

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ilia-kats merged 3 commits into from
Nov 2, 2026
Merged

[pre-commit.ci] pre-commit autoupdate #108

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d1bc098
[pre-commit.ci] pre-commit autoupdate
pre-commit-ci[bot] Nov 2, 2026
e26c90f
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 2, 2026
47b053c
docs: remove katex (conflicts with scverse-doc)
ilia-kats Nov 2, 2026
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6 changes: 3 additions & 3 deletions .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ default_stages:
minimum_pre_commit_version: 2.16.0
repos:
- repo: https://github.com/biomejs/pre-commit
rev: 9043c78f09d0d322ff458336dcb1aefcdfdbb8a0 # frozen: v2.6.3
rev: bc3c1d9acd69eaa1e5912f282ca563f914fd78d3 # frozen: v2.6.4
hooks:
- id: biome-format
exclude: ^\.cruft\.json$ # inconsistent indentation with cruft - file never to be modified manually.
Expand All @@ -16,7 +16,7 @@ repos:
hooks:
- id: pyproject-fmt
- repo: https://github.com/astral-sh/ruff-pre-commit
rev: f368fb366ff7f2f808dd324b83a6d32267799e19 # frozen: v0.17.2
rev: 25bcf95026b96e2dd3c0aec3090c3d6ef6ca2e6c # frozen: v0.17.3
hooks:
- id: ruff-check
types_or: [python, pyi, jupyter]
Expand All @@ -37,7 +37,7 @@ repos:
- id: check-merge-conflict
args: [--assume-in-merge]
- repo: https://github.com/pre-commit/mirrors-mypy
rev: 2834ec6639549dd6796205c8f011dedcd587288b # frozen: v2.4.0
rev: ad26ebfa797fcb9b8f83275937c1c1d6e126719c # frozen: v2.4.1
hooks:
- id: mypy
exclude: ^docs/sphinx_ext_examples/
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1 change: 0 additions & 1 deletion .readthedocs.yaml
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Expand Up @@ -4,7 +4,6 @@ build:
os: ubuntu-24.04
tools:
python: "3.14"
nodejs: latest
jobs:
create_environment:
- asdf plugin add uv
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6 changes: 0 additions & 6 deletions docs/conf.py
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Expand Up @@ -5,15 +5,12 @@
# https://www.sphinx-doc.org/page/usage/configuration.html

# -- Path setup --------------------------------------------------------------
import shutil
import sys
from datetime import datetime
from importlib.metadata import metadata
from pathlib import Path

from scverse_doc.registry import intersphinx
from sphinxcontrib import katex


HERE = Path(__file__).parent
sys.path.insert(0, str(HERE / "sphinx_ext_examples"))
Expand Down Expand Up @@ -44,7 +41,6 @@
extensions = [
"scverse_doc",
"sphinxcontrib.bibtex",
"sphinxcontrib.katex",
"sphinx_autodoc_typehints",
"sphinx_codeautolink",
"IPython.sphinxext.ipython_console_highlighting",
Expand All @@ -66,8 +62,6 @@
html_static_path = ["_static"]
html_css_files = ["css/custom.css"]

katex_prerender = shutil.which(katex.NODEJS_BINARY) is not None

nitpick_ignore: list[tuple[str, str]] = [
# If building the documentation fails because of a missing link that is outside your control,
# you can add an exception to this list.
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