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API_PfTPN
API_PfTPN
 
 
Essentiality_scores
Essentiality_scores
 
 
Figures
Figures
 
 
ONT_gDNA_longread
ONT_gDNA_longread
 
 
IIE_PfPkcomparison.R
IIE_PfPkcomparison.R
 
 
Insertions_distribution.R
Insertions_distribution.R
 
 
MIS_WT_vesus_MIS_MEV.R
MIS_WT_vesus_MIS_MEV.R
 
 
PfTPN_Proportion_statistics.R
PfTPN_Proportion_statistics.R
 
 
Pf_theo_TTAA_identification.R
Pf_theo_TTAA_identification.R
 
 
PlasmoDB_track.R
PlasmoDB_track.R
 
 
QC_Upset20241011.R
QC_Upset20241011.R
 
 
QC_background_genes_99CDS_sites.R
QC_background_genes_99CDS_sites.R
 
 
README.md
README.md
 
 
Step1_cm_merge_cm_Location_conversion_for_exon_or_both_exon_intron.R
Step1_cm_merge_cm_Location_conversion_for_exon_or_both_exon_intron.R
 
 
Step2_countmatrix_siteslevel_bg_noise_removal_CPM.R
Step2_countmatrix_siteslevel_bg_noise_removal_CPM.R
 
 
Step2_countmatrix_template_UTR_annotation.R
Step2_countmatrix_template_UTR_annotation.R
 
 
Step3_Countmatrix2transposonmatrix.R
Step3_Countmatrix2transposonmatrix.R
 
 
after_count_theo_reads_count_matrix_Pf_chimera.R
after_count_theo_reads_count_matrix_Pf_chimera.R
 
 
countmatrix_template_generation_PfTNSeq202410_chimera.R
countmatrix_template_generation_PfTNSeq202410_chimera.R
 
 
exon_intron_Description_of_data.R
exon_intron_Description_of_data.R
 
 
geneconfidentcall.R
geneconfidentcall.R
 
 
readme.txt
readme.txt
 
 
readme202504.txt
readme202504.txt
 
 
sample_variance_checking_normalization.R
sample_variance_checking_normalization.R
 
 
saturation_level_estimation_bidirectional.R
saturation_level_estimation_bidirectional.R
 
 
saturation_level_estimation_unidirectional.R
saturation_level_estimation_unidirectional.R
 
 
site_level_simulation.R
site_level_simulation.R
 
 

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PfTPN

This repository is to show all the analysis of the essential genome of Plasmodium falciparum via transposon mutagenesis

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This repository is to show all the analysis of the essential genome of Plasmodium falciparum via transposon mutagenesis

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