Adding estimated group methylation levels and dispersion to output - #287
Merged
Conversation
…ession_model as it was never checked; throwing on error instead
…accepts initial parameter values as those weren't used. Out-params have been added to return the estimates of p for the beta-binoms in each group and the shared value of the estimated dispersion
…so that it only prints each sample's factor levels if there are few enough samples and so it prints a summary of group factor levels along with the number of samples per group
…, an estimate of the methylation level is provided for each site and an estimate of the shared dispersion parameter. Also removed old code that assigned chunks of data to threads
…t factor levels for when printing a design
…iterative estimation fails to converge; there are ok reasons for not converging
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.