Updates to radmeth optimization for speed, with minor changes to selectsites, counts and documentation - #300

Merged

andrewdavidsmith merged 15 commits into

radmeth-optimizations

Oct 9, 2025

Commits on Oct 8, 2025

src/radmeth/radmeth.cpp: changing output so it gives 'overdispersion factor' which is the amount of variance beyond the binomial
andrewdavidsmith
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src/radmeth/radmeth_model.hpp: n_meth is now double to handle the fractional counts from nanopore
andrewdavidsmith
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src/radmeth/radmeth_optimize.cpp: changed strategies to do all computations for each individual and to use the lgamma which seems now to work
andrewdavidsmith
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src/radmeth/radmeth.cpp: added description for ovdispersion factor
andrewdavidsmith
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src/radmeth/radmeth_model.hpp: updates to the caching structure for temporary vars
andrewdavidsmith
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src/radmeth/radmeth.cpp: tweak
andrewdavidsmith
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src/radmeth/radmeth_optimize.cpp: changes to cache intermediate variables for speed
andrewdavidsmith
committed

Commits on Oct 9, 2025