Skip to content

Problem to compile non-canonical branch #49

Description

@szachn-u

Hello,

I am trying to compile the non-canonical branch of kmtricks, but I have an issue with the vp4.h file from TurboP.

Here are the command I typed:

git clone --recursive -b non-canonical --single-branch https://github.com/tlemane/kmtricks
cd kmtricks

there were compiling issues with older version of kff and TurboP so I downloaded newer version
cd thirdparty/
rm -r kff-cpp-api/
rm -r TurboPFor-Integer-Compression/
git clone https://github.com/Kmer-File-Format/kff-cpp-api
git clone --recursive https://github.com/powturbo/TurboPFor-Integer-Compression
cd ../

I also used only one thread because of a warning due to jobserver
./install.sh -j 1

now I get this error message

[ 76%] Building CXX object tests/CMakeFiles/kmtricks-task-tests.dir/task_main.cpp.o
In file included from /home/ugosz/tools/kmtricks_non_canonical_4/include/kmtricks/gatb/count_processor.hpp:22,
from /home/ugosz/tools/kmtricks_non_canonical_4/include/kmtricks/task.hpp:32,
from /home/ugosz/tools/kmtricks_non_canonical_4/tests/task_main.cpp:2:
/home/ugosz/tools/kmtricks_non_canonical_4/include/kmtricks/io/hash_file.hpp:22:10: fatal error: vp4.h: No such file or directory
22 | #include <vp4.h>

vp4.h is located in the TurboP directory, in kmtricks/thirdparty/TurboPFor-Integer-Compression/lib/include_/

Would it be possible to help me with this ?

Thanks

Ugo

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions