Deep-QPI-Cell-Segmentation

cleaning and creation of examples will be done soon

Paper: Self-Supervised Pretraining for Transferable Quantitative Phase Image Cell Segmentation

Name		Name	Last commit message	Last commit date
labeling		labeling
utils		utils
README.md		README.md
config.py		config.py
count_cells.py		count_cells.py
create_examples.py		create_examples.py
create_examples_standard_methods.py		create_examples_standard_methods.py
dataset.py		dataset.py
dt_run.m		dt_run.m
evaluate_standard_methods.py		evaluate_standard_methods.py
export_results.py		export_results.py
frst_run.m		frst_run.m
get_pretrain_mean_std.py		get_pretrain_mean_std.py
get_segmentation_pro_vaska.py		get_segmentation_pro_vaska.py
loewke_run.m		loewke_run.m
main_pretrain_crossval.py		main_pretrain_crossval.py
main_pretrain_crossval_dt_apfix.py		main_pretrain_crossval_dt_apfix.py
optimize_segmentation.py		optimize_segmentation.py
plot_model.py		plot_model.py
qpi_log2_run.m		qpi_log2_run.m
read_params.py		read_params.py
segm_dt.m		segm_dt.m
segm_dt_eval.m		segm_dt_eval.m
segm_frst.m		segm_frst.m
segm_frst_eval.m		segm_frst_eval.m
segm_loewke_orig.m		segm_loewke_orig.m
segm_loewke_orig_eval.m		segm_loewke_orig_eval.m
segm_qpi_log2.m		segm_qpi_log2.m
segm_qpi_log2_eval.m		segm_qpi_log2_eval.m
segmenters.py		segmenters.py
split_train_test.py		split_train_test.py
spliter_for_matlab_methods.py		spliter_for_matlab_methods.py
test_fcn.py		test_fcn.py
test_standard_methods.py		test_standard_methods.py
train.py		train.py
unet.py		unet.py