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augustus

Here are 7 public repositories matching this topic...

schellt / busco2snap

Create a SNAP model from BUSCO output

snap gene-prediction augustus busco

Updated Apr 14, 2022
Perl

juliawiggeshoff / AugusMake

The AugusMake pipeline is a Snakemake-based workflow for generating gene annotations using the Augustus software. AugusMake can perform gene predictions using any combination of the three methods: ab initio, with extrinsic hints, or by training a new species.

workflow rna-seq snakemake reproducibility transcriptome-assembly gene-prediction augustus

Updated Dec 21, 2023
Python

llrs / Comparer

The current code I developed to compare the examples programs

glimmer augustus genemark prodigal easygene

Updated Jun 20, 2014
Python

ptemidayo / giardia-annotation-pipeline

Comprehensive three-way consensus annotation pipeline for Giardia genomes (v5.0)

genomics genome bioinformatics-pipeline glimmer genome-annotation augustus prodigal giardia

Updated Nov 12, 2025
Shell

DEBOPRIYA2320 / genome-annotation-overview

Comprehensive overview of genome annotation processes, including key steps, tools, and databases used for structural and functional annotation.

bioinformatics genomics computational-biology gene-ontology genome-annotation blast kegg functional-annotation augustus structural-annotation

Updated Oct 7, 2025

capuccino26 / PTPP

A pipeline developed for the analysis of chromosome position of target protein sequences.

protein-structure protein-sequences blastn augustus exonerate

Updated Dec 30, 2025
Python

purefunctor / stepped-augustus

A variation of the Augustus Cipher that offsets space-separated words based on the position of each character.

python cipher augustus python37 pypi-package python38

Updated Jul 15, 2020
Python

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