e-utilities

Here are 4 public repositories matching this topic...

cyanheads / pubmed-mcp-server

Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.

bioinformatics typescript mcp pubmed citations open-access mesh full-text ncbi biomedical ai-agents europe-pmc unpaywall ai-tools pubmed-api model-context-protocol mcp-server e-utilities cyanheads

Updated Oct 9, 2026
TypeScript

agenticluke / pubmed-research-plus

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Claude Code skill to search PubMed and NCBI for papers, MeSH, PMIDs, abstracts, and citations; proudly built on affaan-m/ECC.

pubmed mesh ncbi biomedical-research medical-research claude-code e-utilities claude-code-skill

Updated Sep 18, 2026

SidSin0809 / phyloseq-taxid-resolver

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Batch-resolve NCBI Taxonomy IDs (TaxIDs) from a phyloseq-style taxonomy CSV using Biopython Entrez, with a live tqdm progress bar, caching, resume, safe partial writes, and optional species-rank verification.

python bioinformatics metagenomics biopython entrez ncbi-taxonomy command-line-tool taxid microbiome ncbi tqdm phyloseq refseq e-utilities

Updated Sep 18, 2025
Python

iwinoid / eutils-mcp-server

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MCP server exposing the nine NCBI Entrez E-utilities as eleven read-only tools

bioinformatics typescript genomics mcp pubmed entrez ncbi literature-search llm model-context-protocol mcp-server e-utilities

Updated Sep 24, 2026
TypeScript

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