pyseer

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cinnetcrash / reffree-amr-gwas

Reference-free AMR GWAS + mobilome triage: unitig-based pyseer mixed-model GWAS that flags novel resistance determinants and scores their phylogenetic mobility

bioinformatics snakemake antimicrobial-resistance mobile-genetic-elements bacterial-gwas genomic-surveillance unitig pyseer

Updated Jun 10, 2026
Python

gmboowa / rMAP-GWAS

Star

Portable WDL/Cromwell workflow for microbial case-control GWAS from paired-end reads, producing annotated pyseer associations & HTML reports.

bioinformatics cromwell pathogen-genomics wdl-workflow genomic-surveillance panaroo pyseer microbial-gwas unitig-caller

Updated Jun 17, 2026
WDL

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