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  1. trackastra trackastra Public

    Transformer-based cell tracking for live-cell microscopy

    Python 123 23

  2. spotiflow spotiflow Public

    Accurate and efficient spot detection for microscopy data

    Python 117 17

  3. tarrow tarrow Public

    Time arrow prediction for live-cell microscopy

    Python 21 7

  4. napari-trackastra napari-trackastra Public

    napari plugin for trackastra

    Python 17 2

  5. napari-spotiflow napari-spotiflow Public

    Spotiflow plugin for napari

    Python 15 2

  6. diffusion_model_tutorial diffusion_model_tutorial Public

    Jupyter Notebook 3

Repositories

Showing 10 of 15 repositories
  • DLAI_2025 Public

    course material

    weigertlab/DLAI_2025’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 22, 2026
  • spotiflow Public

    Accurate and efficient spot detection for microscopy data

    weigertlab/spotiflow’s past year of commit activity
    Python 117 BSD-3-Clause 17 6 1 Updated Jan 20, 2026
  • napari-spotiflow Public

    Spotiflow plugin for napari

    weigertlab/napari-spotiflow’s past year of commit activity
    Python 15 BSD-3-Clause 2 1 0 Updated Jan 5, 2026
  • trackastra Public

    Transformer-based cell tracking for live-cell microscopy

    weigertlab/trackastra’s past year of commit activity
    Python 123 BSD-3-Clause 23 6 0 Updated Dec 29, 2025
  • trackastra-models Public
    weigertlab/trackastra-models’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Nov 13, 2025
  • napari-trackastra Public

    napari plugin for trackastra

    weigertlab/napari-trackastra’s past year of commit activity
    Python 17 BSD-3-Clause 2 2 0 Updated Nov 12, 2025
  • spotiflow-models Public
    weigertlab/spotiflow-models’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Sep 19, 2025
  • BCSS Public Forked from PathologyDataScience/BCSS

    Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourcing enables convolutional segmentation of histology images. Bioinformatics. 2019. doi: 10.1093/bioinformatics/btz083

    weigertlab/BCSS’s past year of commit activity
    Python 0 MIT 23 0 0 Updated Sep 9, 2025
  • diffusion_model_tutorial Public
    weigertlab/diffusion_model_tutorial’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Feb 15, 2025
  • DLIA_24 Public

    Seminar Deep Learning for image analysis

    weigertlab/DLIA_24’s past year of commit activity
    1 0 0 0 Updated Dec 12, 2024
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