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Add workflow debugging feature #203

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SonarQubeCloud / SonarCloud Code Analysis succeeded Apr 17, 2026 in 31s

Quality Gate passed

Issues
14 New issues
0 Accepted issues

Measures
0 Security Hotspots
44.2% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud

Annotations

Check failure on line 22 in cirro/sdk/nextflow_utils.py

See this annotation in the file changed.

@sonarqubecloud sonarqubecloud / SonarCloud Code Analysis

Refactor this function to reduce its Cognitive Complexity from 16 to the 15 allowed. 

See more on https://sonarcloud.io/project/issues?id=CirroBio_Cirro-client&issues=AZ2dSDGXktBSZ6HUPTNH&open=AZ2dSDGXktBSZ6HUPTNH&pullRequest=203

Check warning on line 163 in cirro/sdk/task.py

See this annotation in the file changed.

@sonarqubecloud sonarqubecloud / SonarCloud Code Analysis

Replace this constructor call with a literal. 

See more on https://sonarcloud.io/project/issues?id=CirroBio_Cirro-client&issues=AZ2dSDGNktBSZ6HUPTNF&open=AZ2dSDGNktBSZ6HUPTNF&pullRequest=203

Check failure on line 544 in cirro/cli/controller.py

See this annotation in the file changed.

@sonarqubecloud sonarqubecloud / SonarCloud Code Analysis

Refactor this function to reduce its Cognitive Complexity from 16 to the 15 allowed. 

See more on https://sonarcloud.io/project/issues?id=CirroBio_Cirro-client&issues=AZ2dSDEEktBSZ6HUPTNB&open=AZ2dSDEEktBSZ6HUPTNB&pullRequest=203

Check warning on line 165 in cirro/sdk/task.py

See this annotation in the file changed.

@sonarqubecloud sonarqubecloud / SonarCloud Code Analysis

Replace this constructor call with a literal. 

See more on https://sonarcloud.io/project/issues?id=CirroBio_Cirro-client&issues=AZ2dSDGNktBSZ6HUPTNG&open=AZ2dSDGNktBSZ6HUPTNG&pullRequest=203

Check failure on line 333 in cirro/cli/controller.py

See this annotation in the file changed.

@sonarqubecloud sonarqubecloud / SonarCloud Code Analysis

Refactor this function to reduce its Cognitive Complexity from 34 to the 15 allowed. 

See more on https://sonarcloud.io/project/issues?id=CirroBio_Cirro-client&issues=AZ2dSDEEktBSZ6HUPTM_&open=AZ2dSDEEktBSZ6HUPTM_&pullRequest=203

Check failure on line 659 in cirro/cli/controller.py

See this annotation in the file changed.

@sonarqubecloud sonarqubecloud / SonarCloud Code Analysis

Refactor this function to reduce its Cognitive Complexity from 29 to the 15 allowed. 

See more on https://sonarcloud.io/project/issues?id=CirroBio_Cirro-client&issues=AZ2dSDEEktBSZ6HUPTNC&open=AZ2dSDEEktBSZ6HUPTNC&pullRequest=203

Check failure on line 377 in cirro/cli/controller.py

See this annotation in the file changed.

@sonarqubecloud sonarqubecloud / SonarCloud Code Analysis

Define a constant instead of duplicating this literal 'Show full execution log?' 3 times. 

See more on https://sonarcloud.io/project/issues?id=CirroBio_Cirro-client&issues=AZ2dSDEEktBSZ6HUPTM8&open=AZ2dSDEEktBSZ6HUPTM8&pullRequest=203

Check warning on line 377 in cirro/cli/controller.py

See this annotation in the file changed.

@sonarqubecloud sonarqubecloud / SonarCloud Code Analysis

Merge this if statement with the enclosing one. 

See more on https://sonarcloud.io/project/issues?id=CirroBio_Cirro-client&issues=AZ2dSDEEktBSZ6HUPTM-&open=AZ2dSDEEktBSZ6HUPTM-&pullRequest=203

Check failure on line 454 in cirro/cli/controller.py

See this annotation in the file changed.

@sonarqubecloud sonarqubecloud / SonarCloud Code Analysis

Define a constant instead of duplicating this literal "unknown size" 4 times. 

See more on https://sonarcloud.io/project/issues?id=CirroBio_Cirro-client&issues=AZ2dSDEEktBSZ6HUPTM6&open=AZ2dSDEEktBSZ6HUPTM6&pullRequest=203

Check failure on line 450 in cirro/cli/controller.py

See this annotation in the file changed.

@sonarqubecloud sonarqubecloud / SonarCloud Code Analysis

Define a constant instead of duplicating this literal "staged input" 3 times. 

See more on https://sonarcloud.io/project/issues?id=CirroBio_Cirro-client&issues=AZ2dSDEEktBSZ6HUPTM7&open=AZ2dSDEEktBSZ6HUPTM7&pullRequest=203

Check failure on line 439 in cirro/cli/controller.py

See this annotation in the file changed.

@sonarqubecloud sonarqubecloud / SonarCloud Code Analysis

Define a constant instead of duplicating this literal "(empty)" 4 times. 

See more on https://sonarcloud.io/project/issues?id=CirroBio_Cirro-client&issues=AZ2dSDEEktBSZ6HUPTM9&open=AZ2dSDEEktBSZ6HUPTM9&pullRequest=203

Check warning on line 161 in cirro/sdk/task.py

See this annotation in the file changed.

@sonarqubecloud sonarqubecloud / SonarCloud Code Analysis

Replace this constructor call with a literal. 

See more on https://sonarcloud.io/project/issues?id=CirroBio_Cirro-client&issues=AZ2dSDGNktBSZ6HUPTNE&open=AZ2dSDGNktBSZ6HUPTNE&pullRequest=203

Check failure on line 427 in cirro/cli/controller.py

See this annotation in the file changed.

@sonarqubecloud sonarqubecloud / SonarCloud Code Analysis

Refactor this function to reduce its Cognitive Complexity from 19 to the 15 allowed. 

See more on https://sonarcloud.io/project/issues?id=CirroBio_Cirro-client&issues=AZ2dSDEEktBSZ6HUPTNA&open=AZ2dSDEEktBSZ6HUPTNA&pullRequest=203

Check warning on line 159 in cirro/sdk/task.py

See this annotation in the file changed.

@sonarqubecloud sonarqubecloud / SonarCloud Code Analysis

Replace this constructor call with a literal. 

See more on https://sonarcloud.io/project/issues?id=CirroBio_Cirro-client&issues=AZ2dSDGNktBSZ6HUPTND&open=AZ2dSDGNktBSZ6HUPTND&pullRequest=203
View more details on SonarQubeCloud