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Add workflow chart to the narrative site#12

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site/workflow-chart
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Add workflow chart to the narrative site#12
mdenolle wants to merge 1 commit into
masterfrom
site/workflow-chart

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@mdenolle

@mdenolle mdenolle commented Jul 8, 2026

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Publishes the codameter workflow chart to the Quarto narrative site and links it from the navbar.

What

  • quarto/workflow.html — a standalone page: the dv/v pipeline (ingest → measure → C_d → depth → stress → anomaly), the parameter-advisor loop, and a two-lane breakdown of evaluation (pipeline scoring vs FrugalMind agent scoring), with every step tagged by execution mode (agent / deterministic / data / human). Includes a back-to-site bar. Kept as raw HTML, not a .qmd, so its self-contained design cannot fight the theme CSS.
  • quarto/_quarto.yml — registers it as a project resource and adds a top-level "Workflow" navbar item.
  • quarto/_site — re-rendered (17/17, freeze restored → no code re-execution), so every page carries the new navbar link and _site/workflow.html ships.

How it deploys

.github/workflows/quarto.yml publishes the committed quarto/_site to gh-pages on push to master when quarto/_site/** changes. Merging this makes the chart live at …/codameter/workflow.html, reachable from the "Workflow" navbar item on every page.

🤖 Generated with Claude Code

Publish the codameter workflow chart (pipeline + agent steps + evaluation
breakdown) as a standalone page on the Quarto site and link it from the navbar.

- quarto/workflow.html: self-contained page (own design, back-to-site bar), kept
  as raw HTML so its CSS does not fight the theme.
- quarto/_quarto.yml: register it as a project resource and add a top-level
  "Workflow" navbar item (href: workflow.html).
- quarto/_site: re-rendered (freeze restored, no re-execution) so every page
  carries the new navbar link and _site/workflow.html ships. The deploy workflow
  publishes quarto/_site to gh-pages, so this goes live on the next
  master/main deploy.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Copilot AI review requested due to automatic review settings July 8, 2026 01:03

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Pull request overview

Adds a standalone “Workflow” chart page to the Quarto narrative site and publishes it as a static resource, then updates the rendered site so the new page is linked from the navbar across all pages.

Changes:

  • Adds a self-contained workflow.html page (raw HTML + inline CSS) describing the codameter pipeline and evaluation lanes.
  • Registers workflow.html as a Quarto project resource and adds a “Workflow” navbar entry.
  • Re-renders and commits quarto/_site so the navbar link ships on all generated pages (and includes the generated _site/workflow.html).

Reviewed changes

Copilot reviewed 21 out of 21 changed files in this pull request and generated 4 comments.

Show a summary per file
File Description
quarto/_quarto.yml Registers workflow.html as a resource and adds the “Workflow” navbar link.
quarto/workflow.html Adds the standalone workflow chart page (source).
quarto/_site/workflow.html Adds the rendered/deployed workflow chart page (output).
quarto/_site/index.html Updates rendered navbar to include “Workflow”.
quarto/_site/theory-bayesian-measurement.html Updates rendered navbar to include “Workflow”.
quarto/_site/theory-measurement-uq.html Updates rendered navbar to include “Workflow”.
quarto/_site/theory-processing-depth.html Updates rendered navbar to include “Workflow”.
quarto/_site/theory-uq.html Updates rendered navbar to include “Workflow”.
quarto/_site/uncertainty-3-stress.html Updates rendered navbar to include “Workflow”.
quarto/_site/uncertainty-4-attribution.html Updates rendered navbar to include “Workflow”.
quarto/_site/tutorial-00-measurement.html Updates rendered navbar to include “Workflow”.
quarto/_site/tutorial-00-measurement.ipynb Re-render artifact update (cell ids) as part of committing _site.
quarto/_site/tutorial-01-data.html Updates rendered navbar to include “Workflow”.
quarto/_site/tutorial-02-forward.html Updates rendered navbar to include “Workflow”.
quarto/_site/tutorial-03-inversion.html Updates rendered navbar to include “Workflow”.
quarto/_site/tutorial-04-coupling.html Updates rendered navbar to include “Workflow”.
quarto/_site/tutorial-05-interpretation.html Updates rendered navbar to include “Workflow”.
quarto/_site/tutorial-06-endtoend.html Updates rendered navbar to include “Workflow”.
quarto/_site/survey-best-practices.html Updates rendered navbar to include “Workflow”.
quarto/_site/survey-synthetic-demo.html Updates rendered navbar to include “Workflow”.
quarto/_site/survey-references.html Updates rendered navbar to include “Workflow”.

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Comment thread quarto/workflow.html
</style>
</head>
<body>
<header class="sitebar"><a href="index.html">&larr; codameter</a><span class="mid">/ workflow</span><span class="sp"></span><a href="https://github.com/Denolle-Lab/codameter">GitHub</a></header>
</style>
</head>
<body>
<header class="sitebar"><a href="index.html">&larr; codameter</a><span class="mid">/ workflow</span><span class="sp"></span><a href="https://github.com/Denolle-Lab/codameter">GitHub</a></header>
Comment thread quarto/workflow.html
<div class="tbl-wrap">
<table>
<thead>
<tr><th>Step</th><th>Agent role</th><th>Tooling</th><th>Status</th></tr>
<div class="tbl-wrap">
<table>
<thead>
<tr><th>Step</th><th>Agent role</th><th>Tooling</th><th>Status</th></tr>
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2 participants